| http://purl.uniprot.org/unirules/MF_00238#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:100478 up:source unirule:MF_00238 .
_:100479 up:source unirule:MF_00238 .
_:100480 up:source unirule:MF_00238 .
_:100481 up:source unirule:MF_00238 .
_:100482 up:source unirule:MF_00238 .
_:100483 up:source unirule:MF_00238 .
_:100484 up:source unirule:MF_00238 .
_:100485 up:source unirule:MF_00238 .
_:100486 up:source unirule:MF_00238 .
_:100487 up:source unirule:MF_00238 .
_:100488 up:source unirule:MF_00238 .
_:100489 up:source unirule:MF_00238 .
_:100490 up:source unirule:MF_00238 .
_:100491 up:source unirule:MF_00238 .
_:100492 up:source unirule:MF_00238 .
_:100493 up:source unirule:MF_00238 .
_:100494 up:source unirule:MF_00238 .
_:100495 up:source unirule:MF_00238 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005524 ,
GO:0005737 ,
GO:0006220 ,
GO:0036430 ,
GO:0036431 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.4.25' ;
up:fullName 'Cytidylate kinase' ;
up:shortName 'CK' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Cytidine monophosphate kinase' ;
up:shortName 'CMP kinase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cmk' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cytidylate kinase family. Type 1 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
_:100496 a rdf:Statement ;
up:attribution _:100478 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:100497 a rdf:Statement ;
up:attribution _:100479 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:100498 a rdf:Statement ;
up:attribution _:100480 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:100499 a rdf:Statement ;
up:attribution _:100481 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:100500 a rdf:Statement ;
up:attribution _:100482 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:100501 a rdf:Statement ;
up:attribution _:100483 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:100502 a rdf:Statement ;
up:attribution _:100484 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:100503 a rdf:Statement ;
up:attribution _:100485 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:100504 a rdf:Statement ;
up:attribution _:100486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:100505 a rdf:Statement ;
up:attribution _:100487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:100506 a rdf:Statement ;
up:attribution _:100488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:100507 a rdf:Statement ;
up:attribution _:100489 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:100508 a rdf:Statement ;
up:attribution _:100490 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:100509 a rdf:Statement ;
up:attribution _:100491 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036430 .
_:100510 a rdf:Statement ;
up:attribution _:100492 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036431 .
_:100511 a rdf:Statement ;
up:attribution _:100493 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006220 .
_:100512 a rdf:Statement ;
up:attribution _:100494 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:100513 a rdf:Statement ;
up:source unirule:MF_00238 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:100514 a rdf:Statement ;
up:attribution _:100495 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00238
#Rule MF_00238 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00238 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01349 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_00238a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00238a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00238a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00238a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00238a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00238a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP0A6I022 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6I024 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6I0MF_0023817 .
?templateMotifSequenceMatchRegionP0A6I022 faldo:begin ?templateMotifSequenceMatchBeginP0A6I023 .
?templateMotifSequenceMatchBeginP0A6I023 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6I018 ;
faldo:reference isoform:P0A6I0-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6I024 edam:has_input signature:MF_00238 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0023828 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6I0MF_0023819 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0023827 .
?targetMotifMatchRegionMatchBeginMF_0023827 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0023820 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0023828 edam:has_input signature:MF_00238 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6I0MF_0023817, 1, (STRLEN(?templateMotifCigarP0A6I0MF_0023817) - STRLEN(REPLACE(?templateMotifCigarP0A6I0MF_0023817, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP0A6I018) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6I0MF_0023819, 1, (STRLEN(?targetMotifMatchCigarP0A6I0MF_0023819) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6I0MF_0023819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6I0MF_0023819, 1, (STRLEN(?targetMotifMatchCigarP0A6I0MF_0023819) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6I0MF_0023819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0023820) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6I0MF_0023817, 1, (STRLEN(?templateMotifCigarP0A6I0MF_0023817) - STRLEN(REPLACE(?templateMotifCigarP0A6I0MF_0023817, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP0A6I018) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6I0MF_0023819, 1, (STRLEN(?targetMotifMatchCigarP0A6I0MF_0023819) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6I0MF_0023819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6I0MF_0023819, 1, (STRLEN(?targetMotifMatchCigarP0A6I0MF_0023819) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6I0MF_0023819, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0023820) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[GSA][ARNDCQEGHILKMFPSTWYVBZJUOX]GK[GST][STAV]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00238a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
}
"xsd:string |
