| http://purl.uniprot.org/unirules/MF_00239#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:100810 up:source unirule:MF_00239 .
_:100811 up:source unirule:MF_00239 .
_:100812 up:source unirule:MF_00239 .
_:100813 up:source unirule:MF_00239 .
_:100814 up:source unirule:MF_00239 .
_:100815 up:source unirule:MF_00239 .
_:100816 up:source unirule:MF_00239 .
_:100817 up:source unirule:MF_00239 .
_:100818 up:source unirule:MF_00239 .
_:100819 up:source unirule:MF_00239 .
_:100820 up:source unirule:MF_00239 .
_:100821 up:source unirule:MF_00239 .
_:100822 up:source unirule:MF_00239 .
_:100823 up:source unirule:MF_00239 .
_:100824 up:source unirule:MF_00239 .
_:100825 up:source unirule:MF_00239 .
_:100826 up:source unirule:MF_00239 .
_:100827 up:source unirule:MF_00239 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005524 ,
GO:0005737 ,
GO:0006220 ,
GO:0036430 ,
GO:0036431 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.4.25' ;
up:fullName 'Cytidylate kinase' ;
up:shortName 'CK' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Cytidine monophosphate kinase' ;
up:shortName 'CMP kinase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'cmk' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the cytidylate kinase family. Type 2 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
_:100828 a rdf:Statement ;
up:attribution _:100810 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:100829 a rdf:Statement ;
up:attribution _:100811 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:100830 a rdf:Statement ;
up:attribution _:100812 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:100831 a rdf:Statement ;
up:attribution _:100813 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:100832 a rdf:Statement ;
up:attribution _:100814 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:100833 a rdf:Statement ;
up:attribution _:100815 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:100834 a rdf:Statement ;
up:attribution _:100816 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:100835 a rdf:Statement ;
up:attribution _:100817 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:100836 a rdf:Statement ;
up:attribution _:100818 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:100837 a rdf:Statement ;
up:attribution _:100819 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:100838 a rdf:Statement ;
up:attribution _:100820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:100839 a rdf:Statement ;
up:attribution _:100821 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:100840 a rdf:Statement ;
up:attribution _:100822 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:100841 a rdf:Statement ;
up:attribution _:100823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036430 .
_:100842 a rdf:Statement ;
up:attribution _:100824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036431 .
_:100843 a rdf:Statement ;
up:attribution _:100825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006220 .
_:100844 a rdf:Statement ;
up:attribution _:100826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:100845 a rdf:Statement ;
up:source unirule:MF_00239 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:100846 a rdf:Statement ;
up:attribution _:100827 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00239
#Rule MF_00239 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
VALUES ?supertaxon17 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00239 .
?thisOrganism rdfs:subClassOf+ ?supertaxon17 .
BIND(URI(CONCAT(STR(?this), '#MF_00239a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00239a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00239a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00239a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00239a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00239a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionQ5807123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5807125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58071MF_0023918 .
?templateMotifSequenceMatchRegionQ5807123 faldo:begin ?templateMotifSequenceMatchBeginQ5807124 .
?templateMotifSequenceMatchBeginQ5807124 faldo:position ?templateMotifSequenceMatchBeginPositionQ5807119 ;
faldo:reference isoform:Q58071-1 .
?templateMotifSequenceProfileAlignmentOperationQ5807125 edam:has_input signature:MF_00239 ;
rdf:type edam:operation_0300 .
?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0023929 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58071MF_0023920 .
?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0023928 .
?targetMotifMatchRegionMatchBeginMF_0023928 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0023921 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0023929 edam:has_input signature:MF_00239 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58071MF_0023918, 1, (STRLEN(?templateMotifCigarQ58071MF_0023918) - STRLEN(REPLACE(?templateMotifCigarQ58071MF_0023918, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionQ5807119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58071MF_0023920, 1, (STRLEN(?targetMotifMatchCigarQ58071MF_0023920) - STRLEN(REPLACE(?targetMotifMatchCigarQ58071MF_0023920, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58071MF_0023920, 1, (STRLEN(?targetMotifMatchCigarQ58071MF_0023920) - STRLEN(REPLACE(?targetMotifMatchCigarQ58071MF_0023920, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0023921) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58071MF_0023918, 1, (STRLEN(?templateMotifCigarQ58071MF_0023918) - STRLEN(REPLACE(?templateMotifCigarQ58071MF_0023918, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ5807119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58071MF_0023920, 1, (STRLEN(?targetMotifMatchCigarQ58071MF_0023920) - STRLEN(REPLACE(?targetMotifMatchCigarQ58071MF_0023920, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58071MF_0023920, 1, (STRLEN(?targetMotifMatchCigarQ58071MF_0023920) - STRLEN(REPLACE(?targetMotifMatchCigarQ58071MF_0023920, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0023921) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)G[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX][ST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00239a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
}
"xsd:string |
