| http://purl.uniprot.org/unirules/MF_00309#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:125344 up:source unirule:MF_00309 .
_:125345 up:source unirule:MF_00309 .
_:125346 up:source unirule:MF_00309 .
_:125347 up:source unirule:MF_00309 .
_:125348 up:source unirule:MF_00309 .
_:125349 up:source unirule:MF_00309 .
_:125350 up:source unirule:MF_00309 .
_:125351 up:source unirule:MF_00309 .
_:125352 up:source unirule:MF_00309 .
_:125353 up:source unirule:MF_00309 .
_:125354 up:source unirule:MF_00309 .
_:125355 up:source unirule:MF_00309 .
_:125356 up:source unirule:MF_00309 .
_:125357 up:source unirule:MF_00309 .
_:125358 up:source unirule:MF_00309 .
_:125359 up:source unirule:MF_00309 .
_:125360 up:source unirule:MF_00309 .
_:125361 up:source unirule:MF_00309 .
_:125362 up:source unirule:MF_00309 .
_:125363 up:source unirule:MF_00309 .
?this up:annotation ?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0005524 ,
GO:0042777 ,
GO:0046933 ,
keyword:1278 ,
keyword:375 ,
keyword:406 ,
keyword:547 ,
keyword:66 ,
keyword:67 ,
keyword:813 .
?gene0 skos:prefLabel 'atpA' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ATPase alpha/beta chains family.' .
?case4 up:classifiedWith GO:0005886 ,
keyword:1003 ,
keyword:472 ;
up:recommendedName ?name5 .
?name5 up:ecName '7.1.2.2' ;
up:fullName 'A-type ATP synthase subunit A' ;
rdf:type up:Structured_Name .
?case6 up:alternativeName ?name8 ;
up:recommendedName ?name7 .
?name7 up:ecName '7.1.2.2' ;
up:fullName 'V-type ATP synthase alpha chain' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'V-ATPase subunit A' ;
rdf:type up:Structured_Name .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:30616 .
_:125364 a rdf:Statement ;
up:attribution _:125344 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:125365 a rdf:Statement ;
up:attribution _:125345 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:125366 a rdf:Statement ;
up:attribution _:125346 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:125367 a rdf:Statement ;
up:attribution _:125347 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:125368 a rdf:Statement ;
up:attribution _:125348 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:66 .
_:125369 a rdf:Statement ;
up:attribution _:125349 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:125370 a rdf:Statement ;
up:attribution _:125350 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:125371 a rdf:Statement ;
up:attribution _:125351 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:406 .
_:125372 a rdf:Statement ;
up:attribution _:125352 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:375 .
_:125373 a rdf:Statement ;
up:attribution _:125353 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:125374 a rdf:Statement ;
up:attribution _:125354 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:125375 a rdf:Statement ;
up:attribution _:125355 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046933 .
_:125376 a rdf:Statement ;
up:attribution _:125356 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042777 .
_:125377 a rdf:Statement ;
up:attribution _:125357 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:125378 a rdf:Statement ;
up:attribution _:125358 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:125379 a rdf:Statement ;
up:attribution _:125359 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:125380 a rdf:Statement ;
up:attribution _:125360 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:125381 a rdf:Statement ;
up:attribution _:125361 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:125382 a rdf:Statement ;
up:attribution _:125362 ;
rdf:subject ?case6 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:125383 a rdf:Statement ;
up:source unirule:MF_00309 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:125384 a rdf:Statement ;
up:attribution _:125363 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00309
#Rule MF_00309 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2024-11-28
VALUES ?supertaxon16 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00309 .
?thisOrganism rdfs:subClassOf+ ?supertaxon16 .
BIND(URI(CONCAT(STR(?this), '#MF_00309a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00309a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionQ5767022 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5767024 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57670MF_0030917 .
?templateMotifSequenceMatchRegionQ5767022 faldo:begin ?templateMotifSequenceMatchBeginQ5767023 .
?templateMotifSequenceMatchBeginQ5767023 faldo:position ?templateMotifSequenceMatchBeginPositionQ5767018 ;
faldo:reference isoform:Q57670-1 .
?templateMotifSequenceProfileAlignmentOperationQ5767024 edam:has_input signature:MF_00309 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0030928 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57670MF_0030919 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0030927 .
?targetMotifMatchRegionMatchBeginMF_0030927 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0030920 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0030928 edam:has_input signature:MF_00309 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57670MF_0030917, 1, (STRLEN(?templateMotifCigarQ57670MF_0030917) - STRLEN(REPLACE(?templateMotifCigarQ57670MF_0030917, CONCAT('^(?:-*[^-]){', STR(((234 - ?templateMotifSequenceMatchBeginPositionQ5767018) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57670MF_0030919, 1, (STRLEN(?targetMotifMatchCigarQ57670MF_0030919) - STRLEN(REPLACE(?targetMotifMatchCigarQ57670MF_0030919, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57670MF_0030919, 1, (STRLEN(?targetMotifMatchCigarQ57670MF_0030919) - STRLEN(REPLACE(?targetMotifMatchCigarQ57670MF_0030919, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0030920) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57670MF_0030917, 1, (STRLEN(?templateMotifCigarQ57670MF_0030917) - STRLEN(REPLACE(?templateMotifCigarQ57670MF_0030917, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionQ5767018) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57670MF_0030919, 1, (STRLEN(?targetMotifMatchCigarQ57670MF_0030919) - STRLEN(REPLACE(?targetMotifMatchCigarQ57670MF_0030919, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57670MF_0030919, 1, (STRLEN(?targetMotifMatchCigarQ57670MF_0030919) - STRLEN(REPLACE(?targetMotifMatchCigarQ57670MF_0030919, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0030920) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]FG[STA]GKT', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00309a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_00309a5')) AS ?name5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case6) .
BIND(URI(CONCAT(STR(?this), '#MF_00309a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_00309a8')) AS ?name8) .
}
}
"xsd:string |
