| http://purl.uniprot.org/unirules/MF_00365#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:145685 up:source unirule:MF_00365 .
_:145686 up:source unirule:MF_00365 .
_:145687 up:source unirule:MF_00365 .
_:145688 up:source unirule:MF_00365 .
_:145689 up:source unirule:MF_00365 .
_:145690 up:source unirule:MF_00365 .
_:145691 up:source unirule:MF_00365 .
_:145692 up:source unirule:MF_00365 .
_:145693 up:source unirule:MF_00365 .
_:145694 up:source unirule:MF_00365 .
_:145695 up:source unirule:MF_00365 .
_:145696 up:source unirule:MF_00365 .
_:145697 up:source unirule:MF_00365 .
_:145698 up:source unirule:MF_00365 .
_:145699 up:source unirule:MF_00365 .
_:145700 up:source unirule:MF_00365 .
_:145701 up:source unirule:MF_00365 .
_:145702 up:source unirule:MF_00365 .
_:145703 up:source unirule:MF_00365 .
_:145704 up:source unirule:MF_00365 .
_:145705 up:source unirule:MF_00365 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0003697 ,
GO:0005524 ,
GO:0005737 ,
GO:0006260 ,
GO:0006281 ,
GO:0006974 ,
GO:0009432 ,
keyword:227 ,
keyword:234 ,
keyword:235 ,
keyword:238 ,
keyword:547 ,
keyword:67 ,
keyword:742 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'DNA replication and repair protein RecF' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'recF' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RecF family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
up:ligand ?ligand10 ;
rdf:type up:Binding_Site_Annotation .
?pfsb8 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?ligand10 rdfs:subClassOf chebi:30616 .
_:145706 a rdf:Statement ;
up:attribution _:145685 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:145707 a rdf:Statement ;
up:attribution _:145686 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:145708 a rdf:Statement ;
up:attribution _:145687 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:145709 a rdf:Statement ;
up:attribution _:145688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:145710 a rdf:Statement ;
up:attribution _:145689 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:145711 a rdf:Statement ;
up:attribution _:145690 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:145712 a rdf:Statement ;
up:attribution _:145691 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:145713 a rdf:Statement ;
up:attribution _:145692 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:145714 a rdf:Statement ;
up:attribution _:145693 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:145715 a rdf:Statement ;
up:attribution _:145694 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:742 .
_:145716 a rdf:Statement ;
up:attribution _:145695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:145717 a rdf:Statement ;
up:attribution _:145696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:145718 a rdf:Statement ;
up:attribution _:145697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:145719 a rdf:Statement ;
up:attribution _:145698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:145720 a rdf:Statement ;
up:attribution _:145699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003697 .
_:145721 a rdf:Statement ;
up:attribution _:145700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:145722 a rdf:Statement ;
up:attribution _:145701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006260 .
_:145723 a rdf:Statement ;
up:attribution _:145702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006974 .
_:145724 a rdf:Statement ;
up:attribution _:145703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009432 .
_:145725 a rdf:Statement ;
up:attribution _:145704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:145726 a rdf:Statement ;
up:source unirule:MF_00365 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:145727 a rdf:Statement ;
up:attribution _:145705 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00365
#Rule MF_00365 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00365 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00365a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00365a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00365a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00365a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch17 faldo:location ?templateMotifSequenceMatchRegionP0A7H018 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7H020 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7H0MF_0036513 .
?templateMotifSequenceMatchRegionP0A7H018 faldo:begin ?templateMotifSequenceMatchBeginP0A7H019 .
?templateMotifSequenceMatchBeginP0A7H019 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7H014 ;
faldo:reference isoform:P0A7H0-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7H020 edam:has_input signature:MF_00365 ;
rdf:type edam:operation_0300 .
?targetMotifMatch21 faldo:location ?targetMotifMatchRegionMatch22 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0036524 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7H0MF_0036515 .
?targetMotifMatchRegionMatch22 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0036523 .
?targetMotifMatchRegionMatchBeginMF_0036523 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0036516 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0036524 edam:has_input signature:MF_00365 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7H0MF_0036513, 1, (STRLEN(?templateMotifCigarP0A7H0MF_0036513) - STRLEN(REPLACE(?templateMotifCigarP0A7H0MF_0036513, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP0A7H014) + 1)), '}'), '')))), '[a-z]', '')) AS ?step125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7H0MF_0036515, 1, (STRLEN(?targetMotifMatchCigarP0A7H0MF_0036515) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7H0MF_0036515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7H0MF_0036515, 1, (STRLEN(?targetMotifMatchCigarP0A7H0MF_0036515) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7H0MF_0036515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step125), '}'), '')))), '[^-]', ''))) AS ?step226) .
BIND(((?step226 + ?targetMotifMatchRegionMatchBeginPositionMF_0036516) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7H0MF_0036513, 1, (STRLEN(?templateMotifCigarP0A7H0MF_0036513) - STRLEN(REPLACE(?templateMotifCigarP0A7H0MF_0036513, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0A7H014) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7H0MF_0036515, 1, (STRLEN(?targetMotifMatchCigarP0A7H0MF_0036515) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7H0MF_0036515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7H0MF_0036515, 1, (STRLEN(?targetMotifMatchCigarP0A7H0MF_0036515) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7H0MF_0036515, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0036516) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]N[GAS][ARNDCQEGHILKMFPSTWYVBZJUOX]GK[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00365a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
}
"xsd:string |
