| http://purl.uniprot.org/unirules/MF_00370#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:147106 up:source unirule:MF_00370 .
_:147107 up:source unirule:MF_00370 .
_:147108 up:source unirule:MF_00370 .
_:147109 up:source unirule:MF_00370 .
_:147110 up:source unirule:MF_00370 .
_:147111 up:source unirule:MF_00370 .
_:147112 up:source unirule:MF_00370 .
_:147113 up:source unirule:MF_00370 .
_:147114 up:source unirule:MF_00370 .
_:147115 up:source unirule:MF_00370 .
_:147116 up:source unirule:MF_00370 .
_:147117 up:source unirule:MF_00370 .
_:147118 up:source unirule:MF_00370 .
_:147119 up:source unirule:MF_00370 .
_:147120 up:source unirule:MF_00370 .
_:147121 up:source unirule:MF_00370 .
_:147122 up:source unirule:MF_00370 .
_:147123 up:source unirule:MF_00370 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0004765 ,
GO:0005524 ,
GO:0005737 ,
GO:0009423 ,
keyword:28 ,
keyword:418 ,
keyword:547 ,
keyword:57 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.71' ;
up:fullName 'Shikimate kinase' ;
up:shortName 'SK' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'aroK' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GHMP kinase family. Archaeal shikimate kinase subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
_:147124 a rdf:Statement ;
up:attribution _:147106 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:147125 a rdf:Statement ;
up:attribution _:147107 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:147126 a rdf:Statement ;
up:attribution _:147108 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:147127 a rdf:Statement ;
up:attribution _:147109 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:147128 a rdf:Statement ;
up:attribution _:147110 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:147129 a rdf:Statement ;
up:attribution _:147111 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:147130 a rdf:Statement ;
up:attribution _:147112 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:147131 a rdf:Statement ;
up:attribution _:147113 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:147132 a rdf:Statement ;
up:attribution _:147114 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:147133 a rdf:Statement ;
up:attribution _:147115 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:147134 a rdf:Statement ;
up:attribution _:147116 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:147135 a rdf:Statement ;
up:attribution _:147117 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:147136 a rdf:Statement ;
up:attribution _:147118 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:147137 a rdf:Statement ;
up:attribution _:147119 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:147138 a rdf:Statement ;
up:attribution _:147120 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004765 .
_:147139 a rdf:Statement ;
up:attribution _:147121 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009423 .
_:147140 a rdf:Statement ;
up:attribution _:147122 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:147141 a rdf:Statement ;
up:source unirule:MF_00370 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:147142 a rdf:Statement ;
up:attribution _:147123 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00370
#Rule MF_00370 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00370 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00370a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00370a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00370a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00370a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00370a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionQ5883520 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5883522 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58835MF_0037015 .
?templateMotifSequenceMatchRegionQ5883520 faldo:begin ?templateMotifSequenceMatchBeginQ5883521 .
?templateMotifSequenceMatchBeginQ5883521 faldo:position ?templateMotifSequenceMatchBeginPositionQ5883516 ;
faldo:reference isoform:Q58835-1 .
?templateMotifSequenceProfileAlignmentOperationQ5883522 edam:has_input signature:MF_00370 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0037026 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58835MF_0037017 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0037025 .
?targetMotifMatchRegionMatchBeginMF_0037025 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0037018 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0037026 edam:has_input signature:MF_00370 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58835MF_0037015, 1, (STRLEN(?templateMotifCigarQ58835MF_0037015) - STRLEN(REPLACE(?templateMotifCigarQ58835MF_0037015, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionQ5883516) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58835MF_0037017, 1, (STRLEN(?targetMotifMatchCigarQ58835MF_0037017) - STRLEN(REPLACE(?targetMotifMatchCigarQ58835MF_0037017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58835MF_0037017, 1, (STRLEN(?targetMotifMatchCigarQ58835MF_0037017) - STRLEN(REPLACE(?targetMotifMatchCigarQ58835MF_0037017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0037018) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58835MF_0037015, 1, (STRLEN(?templateMotifCigarQ58835MF_0037015) - STRLEN(REPLACE(?templateMotifCigarQ58835MF_0037015, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionQ5883516) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58835MF_0037017, 1, (STRLEN(?targetMotifMatchCigarQ58835MF_0037017) - STRLEN(REPLACE(?targetMotifMatchCigarQ58835MF_0037017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58835MF_0037017, 1, (STRLEN(?targetMotifMatchCigarQ58835MF_0037017) - STRLEN(REPLACE(?targetMotifMatchCigarQ58835MF_0037017, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0037018) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('P[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)GL[ARNDCQEGHILKMFPSTWYVBZJUOX][GS]S[SA]A', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00370a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
