| http://purl.uniprot.org/unirules/MF_00375#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:148821 up:source unirule:MF_00375 .
_:148822 up:source unirule:MF_00375 .
_:148823 up:source unirule:MF_00375 .
_:148824 up:source unirule:MF_00375 .
_:148825 up:source unirule:MF_00375 .
_:148826 up:source unirule:MF_00375 .
_:148827 up:source unirule:MF_00375 .
_:148828 up:source unirule:MF_00375 .
_:148829 up:source unirule:MF_00375 .
_:148830 up:source unirule:MF_00375 .
_:148831 up:source unirule:MF_00375 .
_:148832 up:source unirule:MF_00375 .
_:148833 up:source unirule:MF_00375 .
_:148834 up:source unirule:MF_00375 .
_:148835 up:source unirule:MF_00375 .
_:148836 up:source unirule:MF_00375 .
_:148837 up:source unirule:MF_00375 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0006782 ,
GO:0042286 ,
keyword:413 ,
keyword:627 ,
keyword:663 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.3.8' ;
up:fullName 'Glutamate-1-semialdehyde 2,1-aminomutase' ;
up:shortName 'GSA' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glutamate-1-semialdehyde aminotransferase' ;
up:shortName 'GSA-AT' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'hemL' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. HemL subfamily.' .
?case9 up:classifiedWith GO:0015995 ,
keyword:149 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
_:148838 a rdf:Statement ;
up:attribution _:148821 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:148839 a rdf:Statement ;
up:attribution _:148822 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:148840 a rdf:Statement ;
up:attribution _:148823 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:148841 a rdf:Statement ;
up:attribution _:148824 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:148842 a rdf:Statement ;
up:attribution _:148825 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:148843 a rdf:Statement ;
up:attribution _:148826 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:148844 a rdf:Statement ;
up:attribution _:148827 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:148845 a rdf:Statement ;
up:attribution _:148828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:148846 a rdf:Statement ;
up:attribution _:148829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:627 .
_:148847 a rdf:Statement ;
up:attribution _:148830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:148848 a rdf:Statement ;
up:attribution _:148831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:148849 a rdf:Statement ;
up:attribution _:148832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042286 .
_:148850 a rdf:Statement ;
up:attribution _:148833 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006782 .
_:148851 a rdf:Statement ;
up:attribution _:148834 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:148852 a rdf:Statement ;
up:attribution _:148835 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:149 .
_:148853 a rdf:Statement ;
up:attribution _:148836 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015995 .
_:148854 a rdf:Statement ;
up:source unirule:MF_00375 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:148855 a rdf:Statement ;
up:attribution _:148837 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00375
#Rule MF_00375 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-02-15
VALUES ?supertaxon18 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00375 .
?thisOrganism rdfs:subClassOf+ ?supertaxon18 .
BIND(URI(CONCAT(STR(?this), '#MF_00375a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00375a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00375a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00375a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00375a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00375a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP2389324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2389326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP23893MF_0037519 .
?templateMotifSequenceMatchRegionP2389324 faldo:begin ?templateMotifSequenceMatchBeginP2389325 .
?templateMotifSequenceMatchBeginP2389325 faldo:position ?templateMotifSequenceMatchBeginPositionP2389320 ;
faldo:reference isoform:P23893-1 .
?templateMotifSequenceProfileAlignmentOperationP2389326 edam:has_input signature:MF_00375 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0037530 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP23893MF_0037521 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0037529 .
?targetMotifMatchRegionMatchBeginMF_0037529 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0037522 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0037530 edam:has_input signature:MF_00375 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP23893MF_0037519, 1, (STRLEN(?templateMotifCigarP23893MF_0037519) - STRLEN(REPLACE(?templateMotifCigarP23893MF_0037519, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP2389320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP23893MF_0037521, 1, (STRLEN(?targetMotifMatchCigarP23893MF_0037521) - STRLEN(REPLACE(?targetMotifMatchCigarP23893MF_0037521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP23893MF_0037521, 1, (STRLEN(?targetMotifMatchCigarP23893MF_0037521) - STRLEN(REPLACE(?targetMotifMatchCigarP23893MF_0037521, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0037522) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00375a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p34 .
?p34 skos:narrower .
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p35 .
?p35 skos:narrower .
}
BIND(?this AS ?case11) .
}
}
"xsd:string |
