| http://purl.uniprot.org/unirules/MF_00406#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00406#construct-template-55 |
| http://purl.uniprot.org/unirules/MF_00406#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00406#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_00406#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00406#construct-template-54 |
| http://purl.uniprot.org/unirules/MF_00406#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00406#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_00406#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00406#construct-template-77 |
| http://purl.uniprot.org/unirules/MF_00406#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00406#construct-template-53 |
| http://purl.uniprot.org/unirules/MF_00406#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00406#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_00406#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00406#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00406#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00406#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00406#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00406#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:159636 up:source unirule:MF_00406 .
_:159637 up:source unirule:MF_00406 .
_:159638 up:source unirule:MF_00406 .
_:159639 up:source unirule:MF_00406 .
_:159640 up:source unirule:MF_00406 .
_:159641 up:source unirule:MF_00406 .
_:159642 up:source unirule:MF_00406 .
_:159643 up:source unirule:MF_00406 .
_:159644 up:source unirule:MF_00406 .
_:159645 up:source unirule:MF_00406 .
_:159646 up:source unirule:MF_00406 .
_:159647 up:source unirule:MF_00406 .
_:159648 up:source unirule:MF_00406 .
_:159649 up:source unirule:MF_00406 .
_:159650 up:source unirule:MF_00406 .
_:159651 up:source unirule:MF_00406 .
_:159652 up:source unirule:MF_00406 .
_:159653 up:source unirule:MF_00406 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0006633 ,
GO:0009245 ,
GO:0016836 ,
keyword:441 ,
keyword:443 ,
keyword:444 ,
keyword:456 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.1.59' ;
up:fullName '3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ' ;
rdf:type up:Structured_Name .
?name1 up:fullName '(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase' ;
up:shortName '(3R)-hydroxymyristoyl-ACP dehydrase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Beta-hydroxyacyl-ACP dehydratase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'fabZ' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thioester dehydratase family. FabZ subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
_:159654 a rdf:Statement ;
up:attribution _:159636 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:159655 a rdf:Statement ;
up:attribution _:159637 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:159656 a rdf:Statement ;
up:attribution _:159638 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:159657 a rdf:Statement ;
up:attribution _:159639 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:159658 a rdf:Statement ;
up:attribution _:159640 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:159659 a rdf:Statement ;
up:attribution _:159641 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:159660 a rdf:Statement ;
up:attribution _:159642 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:159661 a rdf:Statement ;
up:attribution _:159643 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:159662 a rdf:Statement ;
up:attribution _:159644 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:159663 a rdf:Statement ;
up:attribution _:159645 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:159664 a rdf:Statement ;
up:attribution _:159646 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:441 .
_:159665 a rdf:Statement ;
up:attribution _:159647 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:159666 a rdf:Statement ;
up:attribution _:159648 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:159667 a rdf:Statement ;
up:attribution _:159649 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016836 .
_:159668 a rdf:Statement ;
up:attribution _:159650 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006633 .
_:159669 a rdf:Statement ;
up:attribution _:159651 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009245 .
_:159670 a rdf:Statement ;
up:attribution _:159652 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:159671 a rdf:Statement ;
up:source unirule:MF_00406 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:159672 a rdf:Statement ;
up:attribution _:159653 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00406
#Rule MF_00406 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00406 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00406a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00406a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00406a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00406a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00406a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00406a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00406a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP0A6Q622 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6Q624 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6Q6MF_0040617 .
?templateMotifSequenceMatchRegionP0A6Q622 faldo:begin ?templateMotifSequenceMatchBeginP0A6Q623 .
?templateMotifSequenceMatchBeginP0A6Q623 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6Q618 ;
faldo:reference isoform:P0A6Q6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6Q624 edam:has_input signature:MF_00406 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0040628 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6Q6MF_0040619 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0040627 .
?targetMotifMatchRegionMatchBeginMF_0040627 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0040620 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0040628 edam:has_input signature:MF_00406 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6Q6MF_0040617, 1, (STRLEN(?templateMotifCigarP0A6Q6MF_0040617) - STRLEN(REPLACE(?templateMotifCigarP0A6Q6MF_0040617, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP0A6Q618) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6Q6MF_0040619, 1, (STRLEN(?targetMotifMatchCigarP0A6Q6MF_0040619) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Q6MF_0040619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6Q6MF_0040619, 1, (STRLEN(?targetMotifMatchCigarP0A6Q6MF_0040619) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6Q6MF_0040619, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0040620) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00406a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon32 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon32 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00406 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00406#construct |
