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SubjectPredicateObject
http://purl.uniprot.org/unirules/MF_00408#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00408#construct-template-68
http://purl.uniprot.org/unirules/MF_00408#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00408#construct-template-27
http://purl.uniprot.org/unirules/MF_00408#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00408#construct-template-29
http://purl.uniprot.org/unirules/MF_00408#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00408#construct-template-28
http://purl.uniprot.org/unirules/MF_00408#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00408#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00408#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00408#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00408#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00408#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:160648 up:source unirule:MF_00408 . _:160649 up:source unirule:MF_00408 . _:160650 up:source unirule:MF_00408 . _:160651 up:source unirule:MF_00408 . _:160652 up:source unirule:MF_00408 . _:160653 up:source unirule:MF_00408 . _:160654 up:source unirule:MF_00408 . _:160655 up:source unirule:MF_00408 . _:160656 up:source unirule:MF_00408 . _:160657 up:source unirule:MF_00408 . _:160658 up:source unirule:MF_00408 . _:160659 up:source unirule:MF_00408 . _:160660 up:source unirule:MF_00408 . _:160661 up:source unirule:MF_00408 . _:160662 up:source unirule:MF_00408 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 ; up:classifiedWith GO:0003700 , GO:0006355 , keyword:238 , keyword:677 , keyword:804 , keyword:805 ; up:recommendedName ?name0 . ?name0 up:fullName 'TATA-box-binding protein' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Box A-binding protein' ; up:shortName 'BAP' ; rdf:type up:Structured_Name . ?name2 up:fullName 'TATA sequence-binding protein' ; up:shortName 'TBP' ; rdf:type up:Structured_Name . ?name3 up:fullName 'TATA-box factor' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'tbp' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the TBP family.' . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; rdf:type up:Repeat_Annotation ; rdfs:comment '1' . ?pfsb9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; rdf:type up:Repeat_Annotation ; rdfs:comment '2' . ?pfsb15 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . _:160663 a rdf:Statement ; up:attribution _:160648 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:160664 a rdf:Statement ; up:attribution _:160649 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:160665 a rdf:Statement ; up:attribution _:160650 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:160666 a rdf:Statement ; up:attribution _:160651 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:160667 a rdf:Statement ; up:attribution _:160652 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:160668 a rdf:Statement ; up:attribution _:160653 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:160669 a rdf:Statement ; up:attribution _:160654 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:160670 a rdf:Statement ; up:attribution _:160655 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:160671 a rdf:Statement ; up:attribution _:160656 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:160672 a rdf:Statement ; up:attribution _:160657 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:238 . _:160673 a rdf:Statement ; up:attribution _:160658 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:677 . _:160674 a rdf:Statement ; up:attribution _:160659 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0003700 . _:160675 a rdf:Statement ; up:attribution _:160660 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006355 . _:160676 a rdf:Statement ; up:source unirule:MF_00408 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:160677 a rdf:Statement ; up:attribution _:160661 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:160678 a rdf:Statement ; up:source unirule:MF_00408 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:160679 a rdf:Statement ; up:attribution _:160662 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00408 #Rule MF_00408 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2022-06-28 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00408 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_00408a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00408a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00408a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00408a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_00408a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00408a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionQ5793024 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5793026 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57930MF_0040819 . ?templateMotifSequenceMatchRegionQ5793024 faldo:begin ?templateMotifSequenceMatchBeginQ5793025 . ?templateMotifSequenceMatchBeginQ5793025 faldo:position ?templateMotifSequenceMatchBeginPositionQ5793020 ; faldo:reference isoform:Q57930-1 . ?templateMotifSequenceProfileAlignmentOperationQ5793026 edam:has_input signature:MF_00408 ; rdf:type edam:operation_0300 . ?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0040830 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57930MF_0040821 . ?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0040829 . ?targetMotifMatchRegionMatchBeginMF_0040829 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0040822 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0040830 edam:has_input signature:MF_00408 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57930MF_0040819, 1, (STRLEN(?templateMotifCigarQ57930MF_0040819) - STRLEN(REPLACE(?templateMotifCigarQ57930MF_0040819, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ5793020) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57930MF_0040821, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040821) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57930MF_0040821, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040821) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) . BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0040822) - 1) AS ?thisPositionOn11) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57930MF_0040819, 1, (STRLEN(?templateMotifCigarQ57930MF_0040819) - STRLEN(REPLACE(?templateMotifCigarQ57930MF_0040819, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionQ5793020) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57930MF_0040821, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040821) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57930MF_0040821, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040821) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040821, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) . BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0040822) - 1) AS ?thisPositionOn12) . BIND(?this AS ?pfs1t35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) . FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) . BIND(URI(CONCAT(STR(?this), '#MF_00408a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionQ5793041 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5793043 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57930MF_0040836 . ?templateMotifSequenceMatchRegionQ5793041 faldo:begin ?templateMotifSequenceMatchBeginQ5793042 . ?templateMotifSequenceMatchBeginQ5793042 faldo:position ?templateMotifSequenceMatchBeginPositionQ5793037 ; faldo:reference isoform:Q57930-1 . ?templateMotifSequenceProfileAlignmentOperationQ5793043 edam:has_input signature:MF_00408 ; rdf:type edam:operation_0300 . ?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0040847 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57930MF_0040838 . ?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0040846 . ?targetMotifMatchRegionMatchBeginMF_0040846 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0040839 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0040847 edam:has_input signature:MF_00408 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57930MF_0040836, 1, (STRLEN(?templateMotifCigarQ57930MF_0040836) - STRLEN(REPLACE(?templateMotifCigarQ57930MF_0040836, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionQ5793037) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57930MF_0040838, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040838) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57930MF_0040838, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040838) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) . BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0040839) - 1) AS ?thisPositionOn17) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57930MF_0040836, 1, (STRLEN(?templateMotifCigarQ57930MF_0040836) - STRLEN(REPLACE(?templateMotifCigarQ57930MF_0040836, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionQ5793037) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57930MF_0040838, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040838) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57930MF_0040838, 1, (STRLEN(?targetMotifMatchCigarQ57930MF_0040838) - STRLEN(REPLACE(?targetMotifMatchCigarQ57930MF_0040838, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) . BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0040839) - 1) AS ?thisPositionOn18) . BIND(?this AS ?pfs1t52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) . FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) . BIND(URI(CONCAT(STR(?this), '#MF_00408a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00408http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00408#construct
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