| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-28 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-85 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-6 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-8 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-88 |
| http://purl.uniprot.org/unirules/MF_00423#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00423#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_00423#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00423#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00423#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00423#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00423#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00423#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:167206 up:source unirule:MF_00423 .
_:167207 up:source unirule:MF_00423 .
_:167208 up:source unirule:MF_00423 .
_:167209 up:source unirule:MF_00423 .
_:167210 up:source unirule:MF_00423 .
_:167211 up:source unirule:MF_00423 .
_:167212 up:source unirule:MF_00423 .
_:167213 up:source unirule:MF_00423 .
_:167214 up:source unirule:MF_00423 .
_:167215 up:source unirule:MF_00423 .
_:167216 up:source unirule:MF_00423 .
_:167217 up:source unirule:MF_00423 .
_:167218 up:source unirule:MF_00423 .
_:167219 up:source unirule:MF_00423 .
_:167220 up:source unirule:MF_00423 .
_:167221 up:source unirule:MF_00423 .
_:167222 up:source unirule:MF_00423 .
_:167223 up:source unirule:MF_00423 .
_:167224 up:source unirule:MF_00423 .
_:167225 up:source unirule:MF_00423 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0001514 ,
GO:0001717 ,
GO:0004125 ,
GO:0005737 ,
keyword:648 ,
keyword:663 ,
keyword:711 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.9.1.1' ;
up:fullName 'L-seryl-tRNA(Sec) selenium transferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Selenocysteine synthase' ;
up:shortName 'Sec synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Selenocysteinyl-tRNA(Sec) synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'selA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; selenocysteinyl-tRNA(Sec) from L-seryl-tRNA(Sec) (bacterial route): step 1/1.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the SelA family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:167226 a rdf:Statement ;
up:attribution _:167206 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:167227 a rdf:Statement ;
up:attribution _:167207 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:167228 a rdf:Statement ;
up:attribution _:167208 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:167229 a rdf:Statement ;
up:attribution _:167209 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:167230 a rdf:Statement ;
up:attribution _:167210 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:167231 a rdf:Statement ;
up:attribution _:167211 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:167232 a rdf:Statement ;
up:attribution _:167212 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:167233 a rdf:Statement ;
up:attribution _:167213 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:167234 a rdf:Statement ;
up:attribution _:167214 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:167235 a rdf:Statement ;
up:attribution _:167215 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:167236 a rdf:Statement ;
up:attribution _:167216 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:167237 a rdf:Statement ;
up:attribution _:167217 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:167238 a rdf:Statement ;
up:attribution _:167218 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:167239 a rdf:Statement ;
up:attribution _:167219 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:711 .
_:167240 a rdf:Statement ;
up:attribution _:167220 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:167241 a rdf:Statement ;
up:attribution _:167221 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004125 .
_:167242 a rdf:Statement ;
up:attribution _:167222 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001514 .
_:167243 a rdf:Statement ;
up:attribution _:167223 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001717 .
_:167244 a rdf:Statement ;
up:attribution _:167224 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:167245 a rdf:Statement ;
up:source unirule:MF_00423 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:167246 a rdf:Statement ;
up:attribution _:167225 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00423
#Rule MF_00423 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00423 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00423a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP0A82124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A82126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A821MF_0042319 .
?templateMotifSequenceMatchRegionP0A82124 faldo:begin ?templateMotifSequenceMatchBeginP0A82125 .
?templateMotifSequenceMatchBeginP0A82125 faldo:position ?templateMotifSequenceMatchBeginPositionP0A82120 ;
faldo:reference isoform:P0A821-1 .
?templateMotifSequenceProfileAlignmentOperationP0A82126 edam:has_input signature:MF_00423 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0042330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A821MF_0042321 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0042329 .
?targetMotifMatchRegionMatchBeginMF_0042329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0042322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0042330 edam:has_input signature:MF_00423 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A821MF_0042319, 1, (STRLEN(?templateMotifCigarP0A821MF_0042319) - STRLEN(REPLACE(?templateMotifCigarP0A821MF_0042319, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionP0A82120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A821MF_0042321, 1, (STRLEN(?targetMotifMatchCigarP0A821MF_0042321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A821MF_0042321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A821MF_0042321, 1, (STRLEN(?targetMotifMatchCigarP0A821MF_0042321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A821MF_0042321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0042322) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00423a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case12) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00423 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00423#construct |
