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http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-77
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-57
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-33
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-79
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-54
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-70
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-76
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-6
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-74
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-72
http://purl.uniprot.org/unirules/MF_00441#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00441#construct-template-8
http://purl.uniprot.org/unirules/MF_00441#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00441#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00441#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00441#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00441#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00441#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:174675 up:source unirule:MF_00441 . _:174676 up:source unirule:MF_00441 . _:174677 up:source unirule:MF_00441 . _:174678 up:source unirule:MF_00441 . _:174679 up:source unirule:MF_00441 . _:174680 up:source unirule:MF_00441 . _:174681 up:source unirule:MF_00441 . _:174682 up:source unirule:MF_00441 . _:174683 up:source unirule:MF_00441 . _:174684 up:source unirule:MF_00441 . _:174685 up:source unirule:MF_00441 . _:174686 up:source unirule:MF_00441 . _:174687 up:source unirule:MF_00441 . _:174688 up:source unirule:MF_00441 . _:174689 up:source unirule:MF_00441 . _:174690 up:source unirule:MF_00441 . _:174691 up:source unirule:MF_00441 . _:174692 up:source unirule:MF_00441 . _:174693 up:source unirule:MF_00441 . _:174694 up:source unirule:MF_00441 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0015979 , keyword:1133 , keyword:472 , keyword:602 , keyword:604 , keyword:674 , keyword:812 ; up:precursor "true"^^xsd:boolean ; up:recommendedName ?name0 . ?name0 up:fullName 'Photosystem II reaction center protein K' ; up:shortName 'PSII-K' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'psbK' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PsbK family.' . ?case4 up:classifiedWith GO:0009535 . ?case5 up:classifiedWith keyword:1003 , keyword:997 . ?case7 up:classifiedWith keyword:793 . ?case9 up:classifiedWith GO:0005886 . ?case10 up:classifiedWith GO:0042651 . ?pfs11 up:annotation ?annotation12 . ?annotation12 faldo:begin ?pfsb13 ; faldo:end ?pfse14 ; rdf:type up:Propeptide_Annotation . ?pfsb13 faldo:position ?thisPositionOn15 ; rdf:type faldo:ExactPosition . ?pfse14 faldo:position ?thisPositionOn16 ; rdf:type faldo:ExactPosition . ?pfs17 up:annotation ?annotation18 . ?annotation18 faldo:begin ?pfsb19 ; faldo:end ?pfse20 ; rdf:type up:Chain_Annotation ; rdfs:comment 'Photosystem II reaction center protein K' . ?pfsb19 faldo:position ?thisPositionOn21 ; rdf:type faldo:ExactPosition . ?pfse20 faldo:position ?thisPositionOn22 ; rdf:type faldo:ExactPosition . _:174695 a rdf:Statement ; up:attribution _:174675 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:174696 a rdf:Statement ; up:attribution _:174676 ; rdf:subject ?this ; rdf:predicate up:precursor ; rdf:object "true"^^xsd:boolean . _:174697 a rdf:Statement ; up:attribution _:174677 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:174698 a rdf:Statement ; up:attribution _:174678 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:174699 a rdf:Statement ; up:attribution _:174679 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:174700 a rdf:Statement ; up:attribution _:174680 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:174701 a rdf:Statement ; up:attribution _:174681 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:604 . _:174702 a rdf:Statement ; up:attribution _:174682 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:674 . _:174703 a rdf:Statement ; up:attribution _:174683 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:174704 a rdf:Statement ; up:attribution _:174684 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:174705 a rdf:Statement ; up:attribution _:174685 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:174706 a rdf:Statement ; up:attribution _:174686 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:174707 a rdf:Statement ; up:attribution _:174687 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009535 . _:174708 a rdf:Statement ; up:attribution _:174688 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:1003 . _:174709 a rdf:Statement ; up:attribution _:174689 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:997 . _:174710 a rdf:Statement ; up:attribution _:174690 ; rdf:subject ?case7 ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:174711 a rdf:Statement ; up:attribution _:174691 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0005886 . _:174712 a rdf:Statement ; up:attribution _:174692 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042651 . _:174713 a rdf:Statement ; up:source unirule:MF_00441 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:174714 a rdf:Statement ; up:attribution _:174693 ; rdf:subject ?pfs11 ; rdf:predicate up:annotation ; rdf:object ?annotation12 . _:174715 a rdf:Statement ; up:source unirule:MF_00441 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . _:174716 a rdf:Statement ; up:attribution _:174694 ; rdf:subject ?pfs17 ; rdf:predicate up:annotation ; rdf:object ?annotation18 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00441 #Rule MF_00441 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2023-07-21 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00441 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_00441 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_00441a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00441a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00441a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionP1581928 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1581930 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15819MF_0044123 . ?templateMotifSequenceMatchRegionP1581928 faldo:begin ?templateMotifSequenceMatchBeginP1581929 . ?templateMotifSequenceMatchBeginP1581929 faldo:position ?templateMotifSequenceMatchBeginPositionP1581924 ; faldo:reference isoform:P15819-1 . ?templateMotifSequenceProfileAlignmentOperationP1581930 edam:has_input signature:MF_00441 ; rdf:type edam:operation_0300 . ?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0044134 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15819MF_0044125 . ?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0044133 . ?targetMotifMatchRegionMatchBeginMF_0044133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0044126 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0044134 edam:has_input signature:MF_00441 ; rdf:type edam:operation_0300 . BIND(1 AS ?thisPositionOn15) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15819MF_0044123, 1, (STRLEN(?templateMotifCigarP15819MF_0044123) - STRLEN(REPLACE(?templateMotifCigarP15819MF_0044123, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP1581924) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15819MF_0044125, 1, (STRLEN(?targetMotifMatchCigarP15819MF_0044125) - STRLEN(REPLACE(?targetMotifMatchCigarP15819MF_0044125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15819MF_0044125, 1, (STRLEN(?targetMotifMatchCigarP15819MF_0044125) - STRLEN(REPLACE(?targetMotifMatchCigarP15819MF_0044125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) . BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0044126) - 1) AS ?thisPositionOn16) . BIND(?this AS ?pfs1t37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) . FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) . BIND(URI(CONCAT(STR(?this), '#MF_00441a12')) AS ?annotation12) . BIND(?this AS ?pfs11) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch42 faldo:location ?templateMotifSequenceMatchRegionP1581943 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1581945 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP15819MF_0044138 . ?templateMotifSequenceMatchRegionP1581943 faldo:begin ?templateMotifSequenceMatchBeginP1581944 . ?templateMotifSequenceMatchBeginP1581944 faldo:position ?templateMotifSequenceMatchBeginPositionP1581939 ; faldo:reference isoform:P15819-1 . ?templateMotifSequenceProfileAlignmentOperationP1581945 edam:has_input signature:MF_00441 ; rdf:type edam:operation_0300 . ?targetMotifMatch46 faldo:location ?targetMotifMatchRegionMatch47 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0044149 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP15819MF_0044140 . ?targetMotifMatchRegionMatch47 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0044148 . ?targetMotifMatchRegionMatchBeginMF_0044148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0044141 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0044149 edam:has_input signature:MF_00441 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15819MF_0044138, 1, (STRLEN(?templateMotifCigarP15819MF_0044138) - STRLEN(REPLACE(?templateMotifCigarP15819MF_0044138, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionP1581939) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15819MF_0044140, 1, (STRLEN(?targetMotifMatchCigarP15819MF_0044140) - STRLEN(REPLACE(?targetMotifMatchCigarP15819MF_0044140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15819MF_0044140, 1, (STRLEN(?targetMotifMatchCigarP15819MF_0044140) - STRLEN(REPLACE(?targetMotifMatchCigarP15819MF_0044140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) . BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0044141) - 1) AS ?thisPositionOn21) . BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn22) . BIND(?this AS ?pfs1t52) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) . FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) . BIND(URI(CONCAT(STR(?this), '#MF_00441a18')) AS ?annotation18) . BIND(?this AS ?pfs17) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case7) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case8) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case10) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00441http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00441#construct
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