| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-49 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-92 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-76 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-93 |
| http://purl.uniprot.org/unirules/MF_00442#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00442#construct-template-91 |
| http://purl.uniprot.org/unirules/MF_00442#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00442#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00442#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00442#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00442#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00442#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:175074 up:source unirule:MF_00442 .
_:175075 up:source unirule:MF_00442 .
_:175076 up:source unirule:MF_00442 .
_:175077 up:source unirule:MF_00442 .
_:175078 up:source unirule:MF_00442 .
_:175079 up:source unirule:MF_00442 .
_:175080 up:source unirule:MF_00442 .
_:175081 up:source unirule:MF_00442 .
_:175082 up:source unirule:MF_00442 .
_:175083 up:source unirule:MF_00442 .
_:175084 up:source unirule:MF_00442 .
_:175085 up:source unirule:MF_00442 .
_:175086 up:source unirule:MF_00442 .
_:175087 up:source unirule:MF_00442 .
_:175088 up:source unirule:MF_00442 .
_:175089 up:source unirule:MF_00442 .
_:175090 up:source unirule:MF_00442 .
_:175091 up:source unirule:MF_00442 .
_:175092 up:source unirule:MF_00442 .
_:175093 up:source unirule:MF_00442 .
_:175094 up:source unirule:MF_00442 .
_:175095 up:source unirule:MF_00442 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0003677 ,
GO:0005524 ,
GO:0006281 ,
GO:0016818 ,
GO:0043138 ,
keyword:227 ,
keyword:234 ,
keyword:238 ,
keyword:347 ,
keyword:378 ,
keyword:413 ,
keyword:547 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.4' ;
up:fullName 'ATP-dependent DNA helicase Hel308' ;
rdf:type up:Structured_Name .
?name1 up:fullName "DNA 3'-5' helicase Hel308" ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'hel308' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the helicase family. Hel308 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
_:175096 a rdf:Statement ;
up:attribution _:175074 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:175097 a rdf:Statement ;
up:attribution _:175075 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:175098 a rdf:Statement ;
up:attribution _:175076 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:175099 a rdf:Statement ;
up:attribution _:175077 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:175100 a rdf:Statement ;
up:attribution _:175078 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:175101 a rdf:Statement ;
up:attribution _:175079 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:175102 a rdf:Statement ;
up:attribution _:175080 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:175103 a rdf:Statement ;
up:attribution _:175081 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:175104 a rdf:Statement ;
up:attribution _:175082 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:175105 a rdf:Statement ;
up:attribution _:175083 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:175106 a rdf:Statement ;
up:attribution _:175084 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:347 .
_:175107 a rdf:Statement ;
up:attribution _:175085 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:175108 a rdf:Statement ;
up:attribution _:175086 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:175109 a rdf:Statement ;
up:attribution _:175087 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:175110 a rdf:Statement ;
up:attribution _:175088 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:175111 a rdf:Statement ;
up:attribution _:175089 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:175112 a rdf:Statement ;
up:attribution _:175090 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:175113 a rdf:Statement ;
up:attribution _:175091 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:175114 a rdf:Statement ;
up:attribution _:175092 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043138 .
_:175115 a rdf:Statement ;
up:attribution _:175093 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016818 .
_:175116 a rdf:Statement ;
up:attribution _:175094 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:175117 a rdf:Statement ;
up:source unirule:MF_00442 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:175118 a rdf:Statement ;
up:attribution _:175095 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00442
#Rule MF_00442 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00442 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00442a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00442a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00442a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00442a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00442a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00442a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00442a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionO7394622 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7394624 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO73946MF_0044217 .
?templateMotifSequenceMatchRegionO7394622 faldo:begin ?templateMotifSequenceMatchBeginO7394623 .
?templateMotifSequenceMatchBeginO7394623 faldo:position ?templateMotifSequenceMatchBeginPositionO7394618 ;
faldo:reference isoform:O73946-1 .
?templateMotifSequenceProfileAlignmentOperationO7394624 edam:has_input signature:MF_00442 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0044228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO73946MF_0044219 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0044227 .
?targetMotifMatchRegionMatchBeginMF_0044227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0044220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0044228 edam:has_input signature:MF_00442 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO73946MF_0044217, 1, (STRLEN(?templateMotifCigarO73946MF_0044217) - STRLEN(REPLACE(?templateMotifCigarO73946MF_0044217, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionO7394618) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO73946MF_0044219, 1, (STRLEN(?targetMotifMatchCigarO73946MF_0044219) - STRLEN(REPLACE(?targetMotifMatchCigarO73946MF_0044219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO73946MF_0044219, 1, (STRLEN(?targetMotifMatchCigarO73946MF_0044219) - STRLEN(REPLACE(?targetMotifMatchCigarO73946MF_0044219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0044220) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00442a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
}
"xsd:string |
