| http://purl.uniprot.org/unirules/MF_00516#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:203113 up:source unirule:MF_00516 .
_:203114 up:source unirule:MF_00516 .
_:203115 up:source unirule:MF_00516 .
_:203116 up:source unirule:MF_00516 .
_:203117 up:source unirule:MF_00516 .
_:203118 up:source unirule:MF_00516 .
_:203119 up:source unirule:MF_00516 .
_:203120 up:source unirule:MF_00516 .
_:203121 up:source unirule:MF_00516 .
_:203122 up:source unirule:MF_00516 .
_:203123 up:source unirule:MF_00516 .
_:203124 up:source unirule:MF_00516 .
_:203125 up:source unirule:MF_00516 .
_:203126 up:source unirule:MF_00516 .
_:203127 up:source unirule:MF_00516 .
_:203128 up:source unirule:MF_00516 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0008115 ,
keyword:274 ,
keyword:285 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.5.3.1' ;
up:fullName 'Monomeric sarcosine oxidase' ;
up:shortName 'MSOX' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'soxA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the oxidative demethylation of sarcosine.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 FAD per subunit.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MSOX/MTOX family. MSOX subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:57692 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'S-8alpha-FAD cysteine' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
_:203129 a rdf:Statement ;
up:attribution _:203113 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:203130 a rdf:Statement ;
up:attribution _:203114 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:203131 a rdf:Statement ;
up:attribution _:203115 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:203132 a rdf:Statement ;
up:attribution _:203116 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:203133 a rdf:Statement ;
up:attribution _:203117 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:203134 a rdf:Statement ;
up:attribution _:203118 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:203135 a rdf:Statement ;
up:attribution _:203119 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:203136 a rdf:Statement ;
up:attribution _:203120 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:203137 a rdf:Statement ;
up:attribution _:203121 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:203138 a rdf:Statement ;
up:attribution _:203122 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:203139 a rdf:Statement ;
up:attribution _:203123 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:203140 a rdf:Statement ;
up:attribution _:203124 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:203141 a rdf:Statement ;
up:attribution _:203125 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008115 .
_:203142 a rdf:Statement ;
up:attribution _:203126 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:203143 a rdf:Statement ;
up:source unirule:MF_00516 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:203144 a rdf:Statement ;
up:attribution _:203127 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:203145 a rdf:Statement ;
up:source unirule:MF_00516 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:203146 a rdf:Statement ;
up:attribution _:203128 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00516
#Rule MF_00516 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00516 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00516a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch27 faldo:location ?templateMotifSequenceMatchRegionP4085928 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4085930 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40859MF_0051623 .
?templateMotifSequenceMatchRegionP4085928 faldo:begin ?templateMotifSequenceMatchBeginP4085929 .
?templateMotifSequenceMatchBeginP4085929 faldo:position ?templateMotifSequenceMatchBeginPositionP4085924 ;
faldo:reference isoform:P40859-1 .
?templateMotifSequenceProfileAlignmentOperationP4085930 edam:has_input signature:MF_00516 ;
rdf:type edam:operation_0300 .
?targetMotifMatch31 faldo:location ?targetMotifMatchRegionMatch32 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0051634 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40859MF_0051625 .
?targetMotifMatchRegionMatch32 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0051633 .
?targetMotifMatchRegionMatchBeginMF_0051633 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0051626 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0051634 edam:has_input signature:MF_00516 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40859MF_0051623, 1, (STRLEN(?templateMotifCigarP40859MF_0051623) - STRLEN(REPLACE(?templateMotifCigarP40859MF_0051623, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP4085924) + 1)), '}'), '')))), '[a-z]', '')) AS ?step135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40859MF_0051625, 1, (STRLEN(?targetMotifMatchCigarP40859MF_0051625) - STRLEN(REPLACE(?targetMotifMatchCigarP40859MF_0051625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40859MF_0051625, 1, (STRLEN(?targetMotifMatchCigarP40859MF_0051625) - STRLEN(REPLACE(?targetMotifMatchCigarP40859MF_0051625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step135), '}'), '')))), '[^-]', ''))) AS ?step236) .
BIND(((?step236 + ?targetMotifMatchRegionMatchBeginPositionMF_0051626) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40859MF_0051623, 1, (STRLEN(?templateMotifCigarP40859MF_0051623) - STRLEN(REPLACE(?templateMotifCigarP40859MF_0051623, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP4085924) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40859MF_0051625, 1, (STRLEN(?targetMotifMatchCigarP40859MF_0051625) - STRLEN(REPLACE(?targetMotifMatchCigarP40859MF_0051625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40859MF_0051625, 1, (STRLEN(?targetMotifMatchCigarP40859MF_0051625) - STRLEN(REPLACE(?targetMotifMatchCigarP40859MF_0051625, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0051626) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP4085945 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4085947 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP40859MF_0051640 .
?templateMotifSequenceMatchRegionP4085945 faldo:begin ?templateMotifSequenceMatchBeginP4085946 .
?templateMotifSequenceMatchBeginP4085946 faldo:position ?templateMotifSequenceMatchBeginPositionP4085941 ;
faldo:reference isoform:P40859-1 .
?templateMotifSequenceProfileAlignmentOperationP4085947 edam:has_input signature:MF_00516 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0051651 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP40859MF_0051642 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0051650 .
?targetMotifMatchRegionMatchBeginMF_0051650 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0051643 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0051651 edam:has_input signature:MF_00516 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP40859MF_0051640, 1, (STRLEN(?templateMotifCigarP40859MF_0051640) - STRLEN(REPLACE(?templateMotifCigarP40859MF_0051640, CONCAT('^(?:-*[^-]){', STR(((316 - ?templateMotifSequenceMatchBeginPositionP4085941) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP40859MF_0051642, 1, (STRLEN(?targetMotifMatchCigarP40859MF_0051642) - STRLEN(REPLACE(?targetMotifMatchCigarP40859MF_0051642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP40859MF_0051642, 1, (STRLEN(?targetMotifMatchCigarP40859MF_0051642) - STRLEN(REPLACE(?targetMotifMatchCigarP40859MF_0051642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0051643) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00516a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
}
"xsd:string |
