| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-0 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-90 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-92 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-22 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-93 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-5 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-2 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-27 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-88 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_00518#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00518#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_00518#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00518#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00518#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00518#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00518#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00518#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:203815 up:source unirule:MF_00518 .
_:203816 up:source unirule:MF_00518 .
_:203817 up:source unirule:MF_00518 .
_:203818 up:source unirule:MF_00518 .
_:203819 up:source unirule:MF_00518 .
_:203820 up:source unirule:MF_00518 .
_:203821 up:source unirule:MF_00518 .
_:203822 up:source unirule:MF_00518 .
_:203823 up:source unirule:MF_00518 .
_:203824 up:source unirule:MF_00518 .
_:203825 up:source unirule:MF_00518 .
_:203826 up:source unirule:MF_00518 .
_:203827 up:source unirule:MF_00518 .
_:203828 up:source unirule:MF_00518 .
_:203829 up:source unirule:MF_00518 .
_:203830 up:source unirule:MF_00518 .
_:203831 up:source unirule:MF_00518 .
_:203832 up:source unirule:MF_00518 .
_:203833 up:source unirule:MF_00518 .
_:203834 up:source unirule:MF_00518 .
_:203835 up:source unirule:MF_00518 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0000049 ,
GO:0005737 ,
GO:0016788 ,
GO:0019478 ,
GO:0043908 ,
GO:0051499 ,
GO:0106026 ,
keyword:378 ,
keyword:694 ,
keyword:820 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.1.96' ;
up:fullName 'D-aminoacyl-tRNA deacylase' ;
up:shortName 'DTD' ;
rdf:type up:Structured_Name .
?name1 up:ecName '3.1.1.-' ;
up:fullName 'Gly-tRNA(Ala) deacylase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dtd' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DTD family.' .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Gly-cisPro motif, important for rejection of L-amino acids' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:203836 a rdf:Statement ;
up:attribution _:203815 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:203837 a rdf:Statement ;
up:attribution _:203816 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:203838 a rdf:Statement ;
up:attribution _:203817 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:203839 a rdf:Statement ;
up:attribution _:203818 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:203840 a rdf:Statement ;
up:attribution _:203819 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:203841 a rdf:Statement ;
up:attribution _:203820 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:203842 a rdf:Statement ;
up:attribution _:203821 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:203843 a rdf:Statement ;
up:attribution _:203822 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:203844 a rdf:Statement ;
up:attribution _:203823 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:203845 a rdf:Statement ;
up:attribution _:203824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:203846 a rdf:Statement ;
up:attribution _:203825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:203847 a rdf:Statement ;
up:attribution _:203826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:203848 a rdf:Statement ;
up:attribution _:203827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:203849 a rdf:Statement ;
up:attribution _:203828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016788 .
_:203850 a rdf:Statement ;
up:attribution _:203829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019478 .
_:203851 a rdf:Statement ;
up:attribution _:203830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051499 .
_:203852 a rdf:Statement ;
up:attribution _:203831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:203853 a rdf:Statement ;
up:attribution _:203832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:203854 a rdf:Statement ;
up:attribution _:203833 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043908 .
_:203855 a rdf:Statement ;
up:attribution _:203834 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0106026 .
_:203856 a rdf:Statement ;
up:source unirule:MF_00518 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:203857 a rdf:Statement ;
up:attribution _:203835 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00518
#Rule MF_00518 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-03-21
VALUES ?supertaxon19 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00518 .
?thisOrganism rdfs:subClassOf+ ?supertaxon19 .
BIND(URI(CONCAT(STR(?this), '#MF_00518a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP0A6M425 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6M427 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6M4MF_0051820 .
?templateMotifSequenceMatchRegionP0A6M425 faldo:begin ?templateMotifSequenceMatchBeginP0A6M426 .
?templateMotifSequenceMatchBeginP0A6M426 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6M421 ;
faldo:reference isoform:P0A6M4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6M427 edam:has_input signature:MF_00518 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0051831 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6M4MF_0051822 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0051830 .
?targetMotifMatchRegionMatchBeginMF_0051830 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0051823 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0051831 edam:has_input signature:MF_00518 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagmotif) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M4MF_0051820, 1, (STRLEN(?templateMotifCigarP0A6M4MF_0051820) - STRLEN(REPLACE(?templateMotifCigarP0A6M4MF_0051820, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP0A6M421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M4MF_0051822, 1, (STRLEN(?targetMotifMatchCigarP0A6M4MF_0051822) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M4MF_0051822, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M4MF_0051822, 1, (STRLEN(?targetMotifMatchCigarP0A6M4MF_0051822) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M4MF_0051822, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0051823) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6M4MF_0051820, 1, (STRLEN(?templateMotifCigarP0A6M4MF_0051820) - STRLEN(REPLACE(?templateMotifCigarP0A6M4MF_0051820, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP0A6M421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6M4MF_0051822, 1, (STRLEN(?targetMotifMatchCigarP0A6M4MF_0051822) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M4MF_0051822, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6M4MF_0051822, 1, (STRLEN(?targetMotifMatchCigarP0A6M4MF_0051822) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6M4MF_0051822, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0051823) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)) = 'GP')) .
BIND(URI(CONCAT(STR(?this), '#MF_00518a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag37) .
}
BIND(IF(BOUND(?tagmotif), ?caseWithTag37, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
