| http://purl.uniprot.org/unirules/MF_00546#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:212499 up:source unirule:MF_00546 .
_:212500 up:source unirule:MF_00546 .
_:212501 up:source unirule:MF_00546 .
_:212502 up:source unirule:MF_00546 .
_:212503 up:source unirule:MF_00546 .
_:212504 up:source unirule:MF_00546 .
_:212505 up:source unirule:MF_00546 .
_:212506 up:source unirule:MF_00546 .
_:212507 up:source unirule:MF_00546 .
_:212508 up:source unirule:MF_00546 .
_:212509 up:source unirule:MF_00546 .
_:212510 up:source unirule:MF_00546 .
_:212511 up:source unirule:MF_00546 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0042597 ,
keyword:574 ,
keyword:732 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Acid shock protein' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'asr' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Required for growth and/or survival at acidic conditions.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:PTM_Annotation ;
rdfs:comment 'Proteolytic processing gives rise to the active protein.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Asr family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Signal_Peptide_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Propeptide_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Acid shock protein' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:212512 a rdf:Statement ;
up:attribution _:212499 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:212513 a rdf:Statement ;
up:attribution _:212500 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:212514 a rdf:Statement ;
up:attribution _:212501 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:212515 a rdf:Statement ;
up:attribution _:212502 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:212516 a rdf:Statement ;
up:attribution _:212503 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:212517 a rdf:Statement ;
up:attribution _:212504 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:212518 a rdf:Statement ;
up:attribution _:212505 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:212519 a rdf:Statement ;
up:attribution _:212506 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:212520 a rdf:Statement ;
up:attribution _:212507 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:212521 a rdf:Statement ;
up:attribution _:212508 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:212522 a rdf:Statement ;
up:source unirule:MF_00546 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:212523 a rdf:Statement ;
up:attribution _:212509 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:212524 a rdf:Statement ;
up:source unirule:MF_00546 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:212525 a rdf:Statement ;
up:attribution _:212510 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:212526 a rdf:Statement ;
up:source unirule:MF_00546 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:212527 a rdf:Statement ;
up:attribution _:212511 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00546
#Rule MF_00546 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00546 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_00546a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00546a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00546a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00546a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00546a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP3656030 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3656032 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36560MF_0054625 .
?templateMotifSequenceMatchRegionP3656030 faldo:begin ?templateMotifSequenceMatchBeginP3656031 .
?templateMotifSequenceMatchBeginP3656031 faldo:position ?templateMotifSequenceMatchBeginPositionP3656026 ;
faldo:reference isoform:P36560-1 .
?templateMotifSequenceProfileAlignmentOperationP3656032 edam:has_input signature:MF_00546 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054636 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36560MF_0054627 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054635 .
?targetMotifMatchRegionMatchBeginMF_0054635 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054628 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054636 edam:has_input signature:MF_00546 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36560MF_0054625, 1, (STRLEN(?templateMotifCigarP36560MF_0054625) - STRLEN(REPLACE(?templateMotifCigarP36560MF_0054625, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP3656026) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36560MF_0054627, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054627) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36560MF_0054627, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054627) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054627, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0054628) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_00546a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP3656045 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3656047 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36560MF_0054640 .
?templateMotifSequenceMatchRegionP3656045 faldo:begin ?templateMotifSequenceMatchBeginP3656046 .
?templateMotifSequenceMatchBeginP3656046 faldo:position ?templateMotifSequenceMatchBeginPositionP3656041 ;
faldo:reference isoform:P36560-1 .
?templateMotifSequenceProfileAlignmentOperationP3656047 edam:has_input signature:MF_00546 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054651 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36560MF_0054642 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054650 .
?targetMotifMatchRegionMatchBeginMF_0054650 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054643 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054651 edam:has_input signature:MF_00546 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36560MF_0054640, 1, (STRLEN(?templateMotifCigarP36560MF_0054640) - STRLEN(REPLACE(?templateMotifCigarP36560MF_0054640, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP3656041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36560MF_0054642, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054642) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36560MF_0054642, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054642) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0054643) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36560MF_0054640, 1, (STRLEN(?templateMotifCigarP36560MF_0054640) - STRLEN(REPLACE(?templateMotifCigarP36560MF_0054640, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP3656041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36560MF_0054642, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054642) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36560MF_0054642, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054642) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054642, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0054643) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_00546a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP3656062 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3656064 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP36560MF_0054657 .
?templateMotifSequenceMatchRegionP3656062 faldo:begin ?templateMotifSequenceMatchBeginP3656063 .
?templateMotifSequenceMatchBeginP3656063 faldo:position ?templateMotifSequenceMatchBeginPositionP3656058 ;
faldo:reference isoform:P36560-1 .
?templateMotifSequenceProfileAlignmentOperationP3656064 edam:has_input signature:MF_00546 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0054668 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP36560MF_0054659 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0054667 .
?targetMotifMatchRegionMatchBeginMF_0054667 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0054660 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0054668 edam:has_input signature:MF_00546 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP36560MF_0054657, 1, (STRLEN(?templateMotifCigarP36560MF_0054657) - STRLEN(REPLACE(?templateMotifCigarP36560MF_0054657, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP3656058) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP36560MF_0054659, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054659) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP36560MF_0054659, 1, (STRLEN(?targetMotifMatchCigarP36560MF_0054659) - STRLEN(REPLACE(?targetMotifMatchCigarP36560MF_0054659, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0054660) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_00546a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
