| http://purl.uniprot.org/unirules/MF_00557#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:217327 up:source unirule:MF_00557 .
_:217328 up:source unirule:MF_00557 .
_:217329 up:source unirule:MF_00557 .
_:217330 up:source unirule:MF_00557 .
_:217331 up:source unirule:MF_00557 .
_:217332 up:source unirule:MF_00557 .
_:217333 up:source unirule:MF_00557 .
_:217334 up:source unirule:MF_00557 .
_:217335 up:source unirule:MF_00557 .
_:217336 up:source unirule:MF_00557 .
_:217337 up:source unirule:MF_00557 .
_:217338 up:source unirule:MF_00557 .
_:217339 up:source unirule:MF_00557 .
_:217340 up:source unirule:MF_00557 .
_:217341 up:source unirule:MF_00557 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0042122 ,
GO:0045135 ,
keyword:456 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.2.3' ;
up:fullName 'Alginate lyase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Poly(beta-D-mannuronate) lyase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'algL' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:enzymeClass .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the polysaccharide lyase 5 family.' .
?case6 up:classifiedWith GO:0042597 ,
keyword:574 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf ?molecule13 .
?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf ?molecule29 .
?molecule29 rdfs:label 'substrate' .
?sam32 up:classifiedWith keyword:732 .
?signal33 faldo:begin ?signalb34 ;
faldo:end ?signale35 .
?signalb34 faldo:position ?signalbp36 .
?signale35 faldo:position ?signalep37 .
?keyword38 up:range ?signal33 .
?keyword39 up:range ?signal33 .
_:217342 a rdf:Statement ;
up:attribution _:217327 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:217343 a rdf:Statement ;
up:attribution _:217328 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:217344 a rdf:Statement ;
up:attribution _:217329 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:217345 a rdf:Statement ;
up:attribution _:217330 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:217346 a rdf:Statement ;
up:attribution _:217331 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:217347 a rdf:Statement ;
up:attribution _:217332 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:217348 a rdf:Statement ;
up:attribution _:217333 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0045135 .
_:217349 a rdf:Statement ;
up:attribution _:217334 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042122 .
_:217350 a rdf:Statement ;
up:attribution _:217335 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:217351 a rdf:Statement ;
up:attribution _:217336 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:217352 a rdf:Statement ;
up:source unirule:MF_00557 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:217353 a rdf:Statement ;
up:attribution _:217337 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:217354 a rdf:Statement ;
up:source unirule:MF_00557 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:217355 a rdf:Statement ;
up:attribution _:217338 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:217356 a rdf:Statement ;
up:source unirule:MF_00557 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:217357 a rdf:Statement ;
up:attribution _:217339 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:217358 a rdf:Statement ;
up:attribution _:217340 ;
rdf:subject ?sam32 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:217359 a rdf:Statement ;
up:attribution _:217341 ;
rdf:subject ?sam32 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00557
#Rule MF_00557 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2022-05-14
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00557 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00557a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00557a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00557a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00557a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionQ0674945 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0674947 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ06749MF_0055740 .
?templateMotifSequenceMatchRegionQ0674945 faldo:begin ?templateMotifSequenceMatchBeginQ0674946 .
?templateMotifSequenceMatchBeginQ0674946 faldo:position ?templateMotifSequenceMatchBeginPositionQ0674941 ;
faldo:reference isoform:Q06749-1 .
?templateMotifSequenceProfileAlignmentOperationQ0674947 edam:has_input signature:MF_00557 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055751 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ06749MF_0055742 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055750 .
?targetMotifMatchRegionMatchBeginMF_0055750 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055743 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055751 edam:has_input signature:MF_00557 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06749MF_0055740, 1, (STRLEN(?templateMotifCigarQ06749MF_0055740) - STRLEN(REPLACE(?templateMotifCigarQ06749MF_0055740, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionQ0674941) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06749MF_0055742, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055742) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055742, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06749MF_0055742, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055742) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055742, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0055743) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06749MF_0055740, 1, (STRLEN(?templateMotifCigarQ06749MF_0055740) - STRLEN(REPLACE(?templateMotifCigarQ06749MF_0055740, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionQ0674941) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06749MF_0055742, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055742) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055742, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06749MF_0055742, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055742) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055742, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0055743) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'SK')) .
BIND(URI(CONCAT(STR(?this), '#MF_00557a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ0674962 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0674964 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ06749MF_0055757 .
?templateMotifSequenceMatchRegionQ0674962 faldo:begin ?templateMotifSequenceMatchBeginQ0674963 .
?templateMotifSequenceMatchBeginQ0674963 faldo:position ?templateMotifSequenceMatchBeginPositionQ0674958 ;
faldo:reference isoform:Q06749-1 .
?templateMotifSequenceProfileAlignmentOperationQ0674964 edam:has_input signature:MF_00557 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055768 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ06749MF_0055759 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055767 .
?targetMotifMatchRegionMatchBeginMF_0055767 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055760 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055768 edam:has_input signature:MF_00557 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06749MF_0055757, 1, (STRLEN(?templateMotifCigarQ06749MF_0055757) - STRLEN(REPLACE(?templateMotifCigarQ06749MF_0055757, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionQ0674958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06749MF_0055759, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055759) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055759, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06749MF_0055759, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055759) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055759, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0055760) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06749MF_0055757, 1, (STRLEN(?templateMotifCigarQ06749MF_0055757) - STRLEN(REPLACE(?templateMotifCigarQ06749MF_0055757, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionQ0674958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06749MF_0055759, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055759) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055759, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06749MF_0055759, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055759) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055759, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0055760) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)) = 'HT')) .
BIND(URI(CONCAT(STR(?this), '#MF_00557a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ0674979 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0674981 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ06749MF_0055774 .
?templateMotifSequenceMatchRegionQ0674979 faldo:begin ?templateMotifSequenceMatchBeginQ0674980 .
?templateMotifSequenceMatchBeginQ0674980 faldo:position ?templateMotifSequenceMatchBeginPositionQ0674975 ;
faldo:reference isoform:Q06749-1 .
?templateMotifSequenceProfileAlignmentOperationQ0674981 edam:has_input signature:MF_00557 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055785 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ06749MF_0055776 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055784 .
?targetMotifMatchRegionMatchBeginMF_0055784 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055777 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055785 edam:has_input signature:MF_00557 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ06749MF_0055774, 1, (STRLEN(?templateMotifCigarQ06749MF_0055774) - STRLEN(REPLACE(?templateMotifCigarQ06749MF_0055774, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionQ0674975) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ06749MF_0055776, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055776) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055776, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ06749MF_0055776, 1, (STRLEN(?targetMotifMatchCigarQ06749MF_0055776) - STRLEN(REPLACE(?targetMotifMatchCigarQ06749MF_0055776, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0055777) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00557a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p89 .
?p89 skos:narrower .
}
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p90 .
?p90 skos:narrower .
}
})) .
} UNION {
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p91 .
?p91 skos:narrower .
}
})) .
}
BIND(?this AS ?case7) .
}
OPTIONAL {
?this up:annotation ?samsignal92 ;
up:sequence ?thisSequence .
?samsignal92 up:range ?samsignalr93 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr93 faldo:begin ?samsignalb94 ;
faldo:end ?samsignale95 .
?samsignalb94 faldo:position ?samsignalbp96 ;
faldo:reference ?thisSequence .
?samsignale95 faldo:position ?samsignalep97 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam32) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00557a38')) AS ?keyword38) .
BIND(URI(CONCAT(STR(?this), '#MF_00557a39')) AS ?keyword39) .
}
"xsd:string |
