| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-75 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-50 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-39 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-38 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-37 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-59 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-34 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-58 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-60 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-84 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-83 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-82 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-81 |
| http://purl.uniprot.org/unirules/MF_00564#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00564#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_00564#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00564#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00564#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00564#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00564#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00564#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:220314 up:source unirule:MF_00564 .
_:220315 up:source unirule:MF_00564 .
_:220316 up:source unirule:MF_00564 .
_:220317 up:source unirule:MF_00564 .
_:220318 up:source unirule:MF_00564 .
_:220319 up:source unirule:MF_00564 .
_:220320 up:source unirule:MF_00564 .
_:220321 up:source unirule:MF_00564 .
_:220322 up:source unirule:MF_00564 .
_:220323 up:source unirule:MF_00564 .
_:220324 up:source unirule:MF_00564 .
_:220325 up:source unirule:MF_00564 .
_:220326 up:source unirule:MF_00564 .
_:220327 up:source unirule:MF_00564 .
_:220328 up:source unirule:MF_00564 .
_:220329 up:source unirule:MF_00564 .
_:220330 up:source unirule:MF_00564 .
_:220331 up:source unirule:MF_00564 .
_:220332 up:source unirule:MF_00564 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000049 ,
GO:0000175 ,
GO:0008033 ,
GO:0009022 ,
GO:0016075 ,
keyword:548 ,
keyword:698 ,
keyword:808 ,
keyword:819 ,
keyword:820 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.56' ;
up:fullName 'Ribonuclease PH' ;
up:shortName 'RNase PH' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rph' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homohexameric ring arranged as a trimer of dimers.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RNase PH family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:43474 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:43474 .
_:220333 a rdf:Statement ;
up:attribution _:220314 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:220334 a rdf:Statement ;
up:attribution _:220315 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:220335 a rdf:Statement ;
up:attribution _:220316 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:220336 a rdf:Statement ;
up:attribution _:220317 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:220337 a rdf:Statement ;
up:attribution _:220318 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:220338 a rdf:Statement ;
up:attribution _:220319 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:220339 a rdf:Statement ;
up:attribution _:220320 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:220340 a rdf:Statement ;
up:attribution _:220321 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:220341 a rdf:Statement ;
up:attribution _:220322 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:220342 a rdf:Statement ;
up:attribution _:220323 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:220343 a rdf:Statement ;
up:attribution _:220324 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:220344 a rdf:Statement ;
up:attribution _:220325 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:220345 a rdf:Statement ;
up:attribution _:220326 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:220346 a rdf:Statement ;
up:attribution _:220327 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009022 .
_:220347 a rdf:Statement ;
up:attribution _:220328 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008033 .
_:220348 a rdf:Statement ;
up:attribution _:220329 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000175 .
_:220349 a rdf:Statement ;
up:attribution _:220330 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016075 .
_:220350 a rdf:Statement ;
up:source unirule:MF_00564 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:220351 a rdf:Statement ;
up:attribution _:220331 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:220352 a rdf:Statement ;
up:source unirule:MF_00564 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:220353 a rdf:Statement ;
up:attribution _:220332 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00564
#Rule MF_00564 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00564 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00564a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00564a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00564a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00564a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00564a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00564a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch26 faldo:location ?templateMotifSequenceMatchRegionP5059727 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5059729 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50597MF_0056422 .
?templateMotifSequenceMatchRegionP5059727 faldo:begin ?templateMotifSequenceMatchBeginP5059728 .
?templateMotifSequenceMatchBeginP5059728 faldo:position ?templateMotifSequenceMatchBeginPositionP5059723 ;
faldo:reference isoform:P50597-1 .
?templateMotifSequenceProfileAlignmentOperationP5059729 edam:has_input signature:MF_00564 ;
rdf:type edam:operation_0300 .
?targetMotifMatch30 faldo:location ?targetMotifMatchRegionMatch31 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0056433 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50597MF_0056424 .
?targetMotifMatchRegionMatch31 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0056432 .
?targetMotifMatchRegionMatchBeginMF_0056432 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056425 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0056433 edam:has_input signature:MF_00564 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50597MF_0056422, 1, (STRLEN(?templateMotifCigarP50597MF_0056422) - STRLEN(REPLACE(?templateMotifCigarP50597MF_0056422, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP5059723) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50597MF_0056424, 1, (STRLEN(?targetMotifMatchCigarP50597MF_0056424) - STRLEN(REPLACE(?targetMotifMatchCigarP50597MF_0056424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50597MF_0056424, 1, (STRLEN(?targetMotifMatchCigarP50597MF_0056424) - STRLEN(REPLACE(?targetMotifMatchCigarP50597MF_0056424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0056425) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50597MF_0056422, 1, (STRLEN(?templateMotifCigarP50597MF_0056422) - STRLEN(REPLACE(?templateMotifCigarP50597MF_0056422, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP5059723) + 1)), '}'), '')))), '[a-z]', '')) AS ?step136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50597MF_0056424, 1, (STRLEN(?targetMotifMatchCigarP50597MF_0056424) - STRLEN(REPLACE(?targetMotifMatchCigarP50597MF_0056424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50597MF_0056424, 1, (STRLEN(?targetMotifMatchCigarP50597MF_0056424) - STRLEN(REPLACE(?targetMotifMatchCigarP50597MF_0056424, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step136), '}'), '')))), '[^-]', ''))) AS ?step237) .
BIND(((?step237 + ?targetMotifMatchRegionMatchBeginPositionMF_0056425) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('[GS]TR', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00564a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP5059744 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5059746 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50597MF_0056439 .
?templateMotifSequenceMatchRegionP5059744 faldo:begin ?templateMotifSequenceMatchBeginP5059745 .
?templateMotifSequenceMatchBeginP5059745 faldo:position ?templateMotifSequenceMatchBeginPositionP5059740 ;
faldo:reference isoform:P50597-1 .
?templateMotifSequenceProfileAlignmentOperationP5059746 edam:has_input signature:MF_00564 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0056450 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50597MF_0056441 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0056449 .
?targetMotifMatchRegionMatchBeginMF_0056449 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056442 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0056450 edam:has_input signature:MF_00564 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50597MF_0056439, 1, (STRLEN(?templateMotifCigarP50597MF_0056439) - STRLEN(REPLACE(?templateMotifCigarP50597MF_0056439, CONCAT('^(?:-*[^-]){', STR(((87 - ?templateMotifSequenceMatchBeginPositionP5059740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50597MF_0056441, 1, (STRLEN(?targetMotifMatchCigarP50597MF_0056441) - STRLEN(REPLACE(?targetMotifMatchCigarP50597MF_0056441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50597MF_0056441, 1, (STRLEN(?targetMotifMatchCigarP50597MF_0056441) - STRLEN(REPLACE(?targetMotifMatchCigarP50597MF_0056441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0056442) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00564a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00564 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00564#construct |
