| http://purl.uniprot.org/unirules/MF_00565#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:220620 up:source unirule:MF_00565 .
_:220621 up:source unirule:MF_00565 .
_:220622 up:source unirule:MF_00565 .
_:220623 up:source unirule:MF_00565 .
_:220624 up:source unirule:MF_00565 .
_:220625 up:source unirule:MF_00565 .
_:220626 up:source unirule:MF_00565 .
_:220627 up:source unirule:MF_00565 .
_:220628 up:source unirule:MF_00565 .
_:220629 up:source unirule:MF_00565 .
_:220630 up:source unirule:MF_00565 .
_:220631 up:source unirule:MF_00565 .
_:220632 up:source unirule:MF_00565 .
_:220633 up:source unirule:MF_00565 .
_:220634 up:source unirule:MF_00565 .
_:220635 up:source unirule:MF_00565 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0036370 ,
GO:0070395 ,
keyword:596 ,
keyword:597 ,
keyword:961 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'D-alanyl carrier protein' ;
up:shortName 'DCP' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'D-alanine--poly(phosphoribitol) ligase subunit 2' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'dltC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC-carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall.' .
?annotation4 a up:Pathway_Annotation ;
rdfs:comment 'Cell wall biogenesis; lipoteichoic acid biosynthesis.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:PTM_Annotation ;
rdfs:comment "4'-phosphopantetheine is transferred from CoA to a specific serine of apo-DCP." .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DltC family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment "O-(pantetheine 4'-phosphoryl)serine" .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:220636 a rdf:Statement ;
up:attribution _:220620 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:220637 a rdf:Statement ;
up:attribution _:220621 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:220638 a rdf:Statement ;
up:attribution _:220622 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:220639 a rdf:Statement ;
up:attribution _:220623 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:220640 a rdf:Statement ;
up:attribution _:220624 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:220641 a rdf:Statement ;
up:attribution _:220625 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:220642 a rdf:Statement ;
up:attribution _:220626 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:220643 a rdf:Statement ;
up:attribution _:220627 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:220644 a rdf:Statement ;
up:attribution _:220628 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:220645 a rdf:Statement ;
up:attribution _:220629 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:220646 a rdf:Statement ;
up:attribution _:220630 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:596 .
_:220647 a rdf:Statement ;
up:attribution _:220631 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:220648 a rdf:Statement ;
up:attribution _:220632 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036370 .
_:220649 a rdf:Statement ;
up:attribution _:220633 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:220650 a rdf:Statement ;
up:attribution _:220634 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070395 .
_:220651 a rdf:Statement ;
up:source unirule:MF_00565 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:220652 a rdf:Statement ;
up:attribution _:220635 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00565
#Rule MF_00565 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00565 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00565a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00565a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00565a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00565a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00565a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00565a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00565a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP3957920 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3957922 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39579MF_0056515 .
?templateMotifSequenceMatchRegionP3957920 faldo:begin ?templateMotifSequenceMatchBeginP3957921 .
?templateMotifSequenceMatchBeginP3957921 faldo:position ?templateMotifSequenceMatchBeginPositionP3957916 ;
faldo:reference isoform:P39579-1 .
?templateMotifSequenceProfileAlignmentOperationP3957922 edam:has_input signature:MF_00565 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0056526 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39579MF_0056517 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0056525 .
?targetMotifMatchRegionMatchBeginMF_0056525 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0056518 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0056526 edam:has_input signature:MF_00565 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39579MF_0056515, 1, (STRLEN(?templateMotifCigarP39579MF_0056515) - STRLEN(REPLACE(?templateMotifCigarP39579MF_0056515, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP3957916) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39579MF_0056517, 1, (STRLEN(?targetMotifMatchCigarP39579MF_0056517) - STRLEN(REPLACE(?targetMotifMatchCigarP39579MF_0056517, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39579MF_0056517, 1, (STRLEN(?targetMotifMatchCigarP39579MF_0056517) - STRLEN(REPLACE(?targetMotifMatchCigarP39579MF_0056517, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0056518) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00565a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
