| http://purl.uniprot.org/unirules/MF_00586#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:228393 up:source unirule:MF_00586 .
_:228394 up:source unirule:MF_00586 .
_:228395 up:source unirule:MF_00586 .
_:228396 up:source unirule:MF_00586 .
_:228397 up:source unirule:MF_00586 .
_:228398 up:source unirule:MF_00586 .
_:228399 up:source unirule:MF_00586 .
_:228400 up:source unirule:MF_00586 .
_:228401 up:source unirule:MF_00586 .
_:228402 up:source unirule:MF_00586 .
_:228403 up:source unirule:MF_00586 .
_:228404 up:source unirule:MF_00586 .
_:228405 up:source unirule:MF_00586 .
_:228406 up:source unirule:MF_00586 .
_:228407 up:source unirule:MF_00586 .
_:228408 up:source unirule:MF_00586 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0006412 ,
GO:0050567 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.5.-' ;
up:fullName 'Glutamyl-tRNA(Gln) amidotransferase subunit D' ;
up:shortName 'Glu-ADT subunit D' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gatD' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Heterodimer of GatD and GatE.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the asparaginase 1 family. GatD subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
_:228409 a rdf:Statement ;
up:attribution _:228393 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:228410 a rdf:Statement ;
up:attribution _:228394 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:228411 a rdf:Statement ;
up:attribution _:228395 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:228412 a rdf:Statement ;
up:attribution _:228396 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:228413 a rdf:Statement ;
up:attribution _:228397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:228414 a rdf:Statement ;
up:attribution _:228398 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:228415 a rdf:Statement ;
up:attribution _:228399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:228416 a rdf:Statement ;
up:attribution _:228400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:228417 a rdf:Statement ;
up:attribution _:228401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:228418 a rdf:Statement ;
up:attribution _:228402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:228419 a rdf:Statement ;
up:attribution _:228403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050567 .
_:228420 a rdf:Statement ;
up:attribution _:228404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006412 .
_:228421 a rdf:Statement ;
up:source unirule:MF_00586 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:228422 a rdf:Statement ;
up:attribution _:228405 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:228423 a rdf:Statement ;
up:source unirule:MF_00586 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:228424 a rdf:Statement ;
up:attribution _:228406 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:228425 a rdf:Statement ;
up:source unirule:MF_00586 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:228426 a rdf:Statement ;
up:attribution _:228407 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:228427 a rdf:Statement ;
up:source unirule:MF_00586 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:228428 a rdf:Statement ;
up:attribution _:228408 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00586
#Rule MF_00586 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00586 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00586a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionO2680236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2680238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26802MF_0058631 .
?templateMotifSequenceMatchRegionO2680236 faldo:begin ?templateMotifSequenceMatchBeginO2680237 .
?templateMotifSequenceMatchBeginO2680237 faldo:position ?templateMotifSequenceMatchBeginPositionO2680232 ;
faldo:reference isoform:O26802-1 .
?templateMotifSequenceProfileAlignmentOperationO2680238 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0058642 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26802MF_0058633 .
?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0058641 .
?targetMotifMatchRegionMatchBeginMF_0058641 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0058634 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0058642 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26802MF_0058631, 1, (STRLEN(?templateMotifCigarO26802MF_0058631) - STRLEN(REPLACE(?templateMotifCigarO26802MF_0058631, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionO2680232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26802MF_0058633, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058633) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26802MF_0058633, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058633) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0058634) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionO2680251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2680253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26802MF_0058646 .
?templateMotifSequenceMatchRegionO2680251 faldo:begin ?templateMotifSequenceMatchBeginO2680252 .
?templateMotifSequenceMatchBeginO2680252 faldo:position ?templateMotifSequenceMatchBeginPositionO2680247 ;
faldo:reference isoform:O26802-1 .
?templateMotifSequenceProfileAlignmentOperationO2680253 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0058657 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26802MF_0058648 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0058656 .
?targetMotifMatchRegionMatchBeginMF_0058656 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0058649 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0058657 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26802MF_0058646, 1, (STRLEN(?templateMotifCigarO26802MF_0058646) - STRLEN(REPLACE(?templateMotifCigarO26802MF_0058646, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionO2680247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26802MF_0058648, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058648) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26802MF_0058648, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058648) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0058649) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionO2680266 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2680268 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26802MF_0058661 .
?templateMotifSequenceMatchRegionO2680266 faldo:begin ?templateMotifSequenceMatchBeginO2680267 .
?templateMotifSequenceMatchBeginO2680267 faldo:position ?templateMotifSequenceMatchBeginPositionO2680262 ;
faldo:reference isoform:O26802-1 .
?templateMotifSequenceProfileAlignmentOperationO2680268 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0058672 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26802MF_0058663 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0058671 .
?targetMotifMatchRegionMatchBeginMF_0058671 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0058664 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0058672 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26802MF_0058661, 1, (STRLEN(?templateMotifCigarO26802MF_0058661) - STRLEN(REPLACE(?templateMotifCigarO26802MF_0058661, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionO2680262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26802MF_0058663, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058663) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26802MF_0058663, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058663) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0058664) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionO2680281 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2680283 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26802MF_0058676 .
?templateMotifSequenceMatchRegionO2680281 faldo:begin ?templateMotifSequenceMatchBeginO2680282 .
?templateMotifSequenceMatchBeginO2680282 faldo:position ?templateMotifSequenceMatchBeginPositionO2680277 ;
faldo:reference isoform:O26802-1 .
?templateMotifSequenceProfileAlignmentOperationO2680283 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0058687 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26802MF_0058678 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0058686 .
?targetMotifMatchRegionMatchBeginMF_0058686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0058679 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0058687 edam:has_input signature:MF_00586 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26802MF_0058676, 1, (STRLEN(?templateMotifCigarO26802MF_0058676) - STRLEN(REPLACE(?templateMotifCigarO26802MF_0058676, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionO2680277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26802MF_0058678, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058678) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26802MF_0058678, 1, (STRLEN(?targetMotifMatchCigarO26802MF_0058678) - STRLEN(REPLACE(?targetMotifMatchCigarO26802MF_0058678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0058679) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00586a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
}
"xsd:string |
