| http://purl.uniprot.org/unirules/MF_00595#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:231709 up:source unirule:MF_00595 .
_:231710 up:source unirule:MF_00595 .
_:231711 up:source unirule:MF_00595 .
_:231712 up:source unirule:MF_00595 .
_:231713 up:source unirule:MF_00595 .
_:231714 up:source unirule:MF_00595 .
_:231715 up:source unirule:MF_00595 .
_:231716 up:source unirule:MF_00595 .
_:231717 up:source unirule:MF_00595 .
_:231718 up:source unirule:MF_00595 .
_:231719 up:source unirule:MF_00595 .
_:231720 up:source unirule:MF_00595 .
_:231721 up:source unirule:MF_00595 .
_:231722 up:source unirule:MF_00595 .
_:231723 up:source unirule:MF_00595 .
_:231724 up:source unirule:MF_00595 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000287 ,
GO:0006107 ,
GO:0008964 ,
GO:0015977 ,
keyword:120 ,
keyword:456 ,
keyword:460 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.31' ;
up:fullName 'Phosphoenolpyruvate carboxylase' ;
up:shortName 'PEPC' ,
'PEPCase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ppc' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PEPCase type 1 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:231725 a rdf:Statement ;
up:attribution _:231709 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:231726 a rdf:Statement ;
up:attribution _:231710 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:231727 a rdf:Statement ;
up:attribution _:231711 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:231728 a rdf:Statement ;
up:attribution _:231712 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:231729 a rdf:Statement ;
up:attribution _:231713 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:231730 a rdf:Statement ;
up:attribution _:231714 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:231731 a rdf:Statement ;
up:attribution _:231715 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:231732 a rdf:Statement ;
up:attribution _:231716 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:231733 a rdf:Statement ;
up:attribution _:231717 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:120 .
_:231734 a rdf:Statement ;
up:attribution _:231718 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:231735 a rdf:Statement ;
up:attribution _:231719 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:231736 a rdf:Statement ;
up:attribution _:231720 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008964 .
_:231737 a rdf:Statement ;
up:attribution _:231721 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006107 .
_:231738 a rdf:Statement ;
up:attribution _:231722 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015977 .
_:231739 a rdf:Statement ;
up:source unirule:MF_00595 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:231740 a rdf:Statement ;
up:attribution _:231723 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:231741 a rdf:Statement ;
up:source unirule:MF_00595 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:231742 a rdf:Statement ;
up:attribution _:231724 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00595
#Rule MF_00595 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00595 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00595a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00595a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00595a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00595a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00595a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00595a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP0086425 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0086427 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00864MF_0059520 .
?templateMotifSequenceMatchRegionP0086425 faldo:begin ?templateMotifSequenceMatchBeginP0086426 .
?templateMotifSequenceMatchBeginP0086426 faldo:position ?templateMotifSequenceMatchBeginPositionP0086421 ;
faldo:reference isoform:P00864-1 .
?templateMotifSequenceProfileAlignmentOperationP0086427 edam:has_input signature:MF_00595 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0059531 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00864MF_0059522 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0059530 .
?targetMotifMatchRegionMatchBeginMF_0059530 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0059523 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0059531 edam:has_input signature:MF_00595 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00864MF_0059520, 1, (STRLEN(?templateMotifCigarP00864MF_0059520) - STRLEN(REPLACE(?templateMotifCigarP00864MF_0059520, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP0086421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00864MF_0059522, 1, (STRLEN(?targetMotifMatchCigarP00864MF_0059522) - STRLEN(REPLACE(?targetMotifMatchCigarP00864MF_0059522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00864MF_0059522, 1, (STRLEN(?targetMotifMatchCigarP00864MF_0059522) - STRLEN(REPLACE(?targetMotifMatchCigarP00864MF_0059522, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0059523) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00595a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP0086440 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0086442 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00864MF_0059535 .
?templateMotifSequenceMatchRegionP0086440 faldo:begin ?templateMotifSequenceMatchBeginP0086441 .
?templateMotifSequenceMatchBeginP0086441 faldo:position ?templateMotifSequenceMatchBeginPositionP0086436 ;
faldo:reference isoform:P00864-1 .
?templateMotifSequenceProfileAlignmentOperationP0086442 edam:has_input signature:MF_00595 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0059546 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00864MF_0059537 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0059545 .
?targetMotifMatchRegionMatchBeginMF_0059545 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0059538 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0059546 edam:has_input signature:MF_00595 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00864MF_0059535, 1, (STRLEN(?templateMotifCigarP00864MF_0059535) - STRLEN(REPLACE(?templateMotifCigarP00864MF_0059535, CONCAT('^(?:-*[^-]){', STR(((546 - ?templateMotifSequenceMatchBeginPositionP0086436) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00864MF_0059537, 1, (STRLEN(?targetMotifMatchCigarP00864MF_0059537) - STRLEN(REPLACE(?targetMotifMatchCigarP00864MF_0059537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00864MF_0059537, 1, (STRLEN(?targetMotifMatchCigarP00864MF_0059537) - STRLEN(REPLACE(?targetMotifMatchCigarP00864MF_0059537, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0059538) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00595a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
