| http://purl.uniprot.org/unirules/MF_00609#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:235643 up:source unirule:MF_00609 .
_:235644 up:source unirule:MF_00609 .
_:235645 up:source unirule:MF_00609 .
_:235646 up:source unirule:MF_00609 .
_:235647 up:source unirule:MF_00609 .
_:235648 up:source unirule:MF_00609 .
_:235649 up:source unirule:MF_00609 .
_:235650 up:source unirule:MF_00609 .
_:235651 up:source unirule:MF_00609 .
_:235652 up:source unirule:MF_00609 .
_:235653 up:source unirule:MF_00609 .
_:235654 up:source unirule:MF_00609 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0004398 ,
keyword:210 ,
keyword:456 ,
keyword:663 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.22' ;
up:fullName 'Histidine decarboxylase' ;
up:shortName 'HDC' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'hdc' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the group II decarboxylase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf ?molecule12 .
?molecule12 rdfs:label 'substrate' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
_:235655 a rdf:Statement ;
up:attribution _:235643 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:235656 a rdf:Statement ;
up:attribution _:235644 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:235657 a rdf:Statement ;
up:attribution _:235645 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:235658 a rdf:Statement ;
up:attribution _:235646 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:235659 a rdf:Statement ;
up:attribution _:235647 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:235660 a rdf:Statement ;
up:attribution _:235648 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:235661 a rdf:Statement ;
up:attribution _:235649 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:235662 a rdf:Statement ;
up:attribution _:235650 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:235663 a rdf:Statement ;
up:attribution _:235651 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:235664 a rdf:Statement ;
up:attribution _:235652 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004398 .
_:235665 a rdf:Statement ;
up:source unirule:MF_00609 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:235666 a rdf:Statement ;
up:attribution _:235653 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:235667 a rdf:Statement ;
up:source unirule:MF_00609 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:235668 a rdf:Statement ;
up:attribution _:235654 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00609
#Rule MF_00609 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00609 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00609a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00609a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00609a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00609a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00609a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch25 faldo:location ?templateMotifSequenceMatchRegionP2857726 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2857728 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28577MF_0060921 .
?templateMotifSequenceMatchRegionP2857726 faldo:begin ?templateMotifSequenceMatchBeginP2857727 .
?templateMotifSequenceMatchBeginP2857727 faldo:position ?templateMotifSequenceMatchBeginPositionP2857722 ;
faldo:reference isoform:P28577-1 .
?templateMotifSequenceProfileAlignmentOperationP2857728 edam:has_input signature:MF_00609 ;
rdf:type edam:operation_0300 .
?targetMotifMatch29 faldo:location ?targetMotifMatchRegionMatch30 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0060932 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28577MF_0060923 .
?targetMotifMatchRegionMatch30 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0060931 .
?targetMotifMatchRegionMatchBeginMF_0060931 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0060924 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0060932 edam:has_input signature:MF_00609 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28577MF_0060921, 1, (STRLEN(?templateMotifCigarP28577MF_0060921) - STRLEN(REPLACE(?templateMotifCigarP28577MF_0060921, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP2857722) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28577MF_0060923, 1, (STRLEN(?targetMotifMatchCigarP28577MF_0060923) - STRLEN(REPLACE(?targetMotifMatchCigarP28577MF_0060923, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28577MF_0060923, 1, (STRLEN(?targetMotifMatchCigarP28577MF_0060923) - STRLEN(REPLACE(?targetMotifMatchCigarP28577MF_0060923, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) .
BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0060924) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00609a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP2857741 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2857743 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28577MF_0060936 .
?templateMotifSequenceMatchRegionP2857741 faldo:begin ?templateMotifSequenceMatchBeginP2857742 .
?templateMotifSequenceMatchBeginP2857742 faldo:position ?templateMotifSequenceMatchBeginPositionP2857737 ;
faldo:reference isoform:P28577-1 .
?templateMotifSequenceProfileAlignmentOperationP2857743 edam:has_input signature:MF_00609 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0060947 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28577MF_0060938 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0060946 .
?targetMotifMatchRegionMatchBeginMF_0060946 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0060939 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0060947 edam:has_input signature:MF_00609 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28577MF_0060936, 1, (STRLEN(?templateMotifCigarP28577MF_0060936) - STRLEN(REPLACE(?templateMotifCigarP28577MF_0060936, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP2857737) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28577MF_0060938, 1, (STRLEN(?targetMotifMatchCigarP28577MF_0060938) - STRLEN(REPLACE(?targetMotifMatchCigarP28577MF_0060938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28577MF_0060938, 1, (STRLEN(?targetMotifMatchCigarP28577MF_0060938) - STRLEN(REPLACE(?targetMotifMatchCigarP28577MF_0060938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0060939) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00609a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
}
"xsd:string |
