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http://purl.uniprot.org/unirules/MF_00644#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00644#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00644#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00644#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00644#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00644#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:246973 up:source unirule:MF_00644 . _:246974 up:source unirule:MF_00644 . _:246975 up:source unirule:MF_00644 . _:246976 up:source unirule:MF_00644 . _:246977 up:source unirule:MF_00644 . _:246978 up:source unirule:MF_00644 . _:246979 up:source unirule:MF_00644 . _:246980 up:source unirule:MF_00644 . _:246981 up:source unirule:MF_00644 . _:246982 up:source unirule:MF_00644 . _:246983 up:source unirule:MF_00644 . _:246984 up:source unirule:MF_00644 . _:246985 up:source unirule:MF_00644 . _:246986 up:source unirule:MF_00644 . _:246987 up:source unirule:MF_00644 . _:246988 up:source unirule:MF_00644 . ?this up:annotation ?annotation2 , ?annotation3 ; up:classifiedWith GO:0015979 , keyword:1133 , keyword:472 , keyword:602 , keyword:604 , keyword:674 , keyword:793 , keyword:812 ; up:recommendedName ?name0 . ?name0 up:fullName 'Photosystem II reaction center protein Z' ; up:shortName 'PSII-Z' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'psbZ' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'May control the interaction of photosystem II (PSII) cores with the light-harvesting antenna, regulates electron flow through the 2 photosystem reaction centers. PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.' . ?annotation3 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the PsbZ family.' . ?case4 up:classifiedWith GO:0009535 . ?case5 up:classifiedWith GO:0042651 . ?pfs8 up:annotation ?annotation9 . ?annotation9 faldo:begin ?pfsb10 ; faldo:end ?pfse11 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfse11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; rdf:type up:Transmembrane_Annotation ; rdfs:comment 'Helical' . ?pfsb16 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . _:246989 a rdf:Statement ; up:attribution _:246973 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:246990 a rdf:Statement ; up:attribution _:246974 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:246991 a rdf:Statement ; up:attribution _:246975 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:246992 a rdf:Statement ; up:attribution _:246976 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:246993 a rdf:Statement ; up:attribution _:246977 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:246994 a rdf:Statement ; up:attribution _:246978 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:604 . _:246995 a rdf:Statement ; up:attribution _:246979 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:674 . _:246996 a rdf:Statement ; up:attribution _:246980 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:246997 a rdf:Statement ; up:attribution _:246981 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:472 . _:246998 a rdf:Statement ; up:attribution _:246982 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:812 . _:246999 a rdf:Statement ; up:attribution _:246983 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1133 . _:247000 a rdf:Statement ; up:attribution _:246984 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:247001 a rdf:Statement ; up:attribution _:246985 ; rdf:subject ?case4 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009535 . _:247002 a rdf:Statement ; up:attribution _:246986 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042651 . _:247003 a rdf:Statement ; up:source unirule:MF_00644 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:247004 a rdf:Statement ; up:attribution _:246987 ; rdf:subject ?pfs8 ; rdf:predicate up:annotation ; rdf:object ?annotation9 . _:247005 a rdf:Statement ; up:source unirule:MF_00644 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:247006 a rdf:Statement ; up:attribution _:246988 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00644 #Rule MF_00644 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2023-07-28 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00644 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_00644 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_00644a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00644a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00644a3')) AS ?annotation3) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP0997425 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0997427 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP09974MF_0064420 . ?templateMotifSequenceMatchRegionP0997425 faldo:begin ?templateMotifSequenceMatchBeginP0997426 . ?templateMotifSequenceMatchBeginP0997426 faldo:position ?templateMotifSequenceMatchBeginPositionP0997421 ; faldo:reference isoform:P09974-1 . ?templateMotifSequenceProfileAlignmentOperationP0997427 edam:has_input signature:MF_00644 ; rdf:type edam:operation_0300 . ?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064431 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP09974MF_0064422 . ?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064430 . ?targetMotifMatchRegionMatchBeginMF_0064430 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064423 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0064431 edam:has_input signature:MF_00644 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09974MF_0064420, 1, (STRLEN(?templateMotifCigarP09974MF_0064420) - STRLEN(REPLACE(?templateMotifCigarP09974MF_0064420, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP0997421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09974MF_0064422, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064422) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09974MF_0064422, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064422) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) . BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0064423) - 1) AS ?thisPositionOn12) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09974MF_0064420, 1, (STRLEN(?templateMotifCigarP09974MF_0064420) - STRLEN(REPLACE(?templateMotifCigarP09974MF_0064420, CONCAT('^(?:-*[^-]){', STR(((28 - ?templateMotifSequenceMatchBeginPositionP0997421) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09974MF_0064422, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064422) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09974MF_0064422, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064422) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064422, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) . BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0064423) - 1) AS ?thisPositionOn13) . BIND(?this AS ?pfs1t36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) . FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) . BIND(URI(CONCAT(STR(?this), '#MF_00644a9')) AS ?annotation9) . BIND(?this AS ?pfs8) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP0997442 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0997444 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP09974MF_0064437 . ?templateMotifSequenceMatchRegionP0997442 faldo:begin ?templateMotifSequenceMatchBeginP0997443 . ?templateMotifSequenceMatchBeginP0997443 faldo:position ?templateMotifSequenceMatchBeginPositionP0997438 ; faldo:reference isoform:P09974-1 . ?templateMotifSequenceProfileAlignmentOperationP0997444 edam:has_input signature:MF_00644 ; rdf:type edam:operation_0300 . ?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064448 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP09974MF_0064439 . ?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064447 . ?targetMotifMatchRegionMatchBeginMF_0064447 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064440 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0064448 edam:has_input signature:MF_00644 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09974MF_0064437, 1, (STRLEN(?templateMotifCigarP09974MF_0064437) - STRLEN(REPLACE(?templateMotifCigarP09974MF_0064437, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionP0997438) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09974MF_0064439, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064439) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09974MF_0064439, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064439) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0064440) - 1) AS ?thisPositionOn18) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09974MF_0064437, 1, (STRLEN(?templateMotifCigarP09974MF_0064437) - STRLEN(REPLACE(?templateMotifCigarP09974MF_0064437, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionP0997438) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09974MF_0064439, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064439) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09974MF_0064439, 1, (STRLEN(?targetMotifMatchCigarP09974MF_0064439) - STRLEN(REPLACE(?targetMotifMatchCigarP09974MF_0064439, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) . BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0064440) - 1) AS ?thisPositionOn19) . BIND(?this AS ?pfs1t53) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) . FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) . BIND(URI(CONCAT(STR(?this), '#MF_00644a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case4) . } OPTIONAL { ?this a up:Protein . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case5) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:1117 . BIND(?this AS ?case6) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:1117 . })) . BIND(?this AS ?case7) . } } "xsd:string
http://purl.uniprot.org/unirules/MF_00644http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00644#construct
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