| http://purl.uniprot.org/unirules/MF_00646#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:247331 up:source unirule:MF_00646 .
_:247332 up:source unirule:MF_00646 .
_:247333 up:source unirule:MF_00646 .
_:247334 up:source unirule:MF_00646 .
_:247335 up:source unirule:MF_00646 .
_:247336 up:source unirule:MF_00646 .
_:247337 up:source unirule:MF_00646 .
_:247338 up:source unirule:MF_00646 .
_:247339 up:source unirule:MF_00646 .
_:247340 up:source unirule:MF_00646 .
_:247341 up:source unirule:MF_00646 .
_:247342 up:source unirule:MF_00646 .
_:247343 up:source unirule:MF_00646 .
_:247344 up:source unirule:MF_00646 .
_:247345 up:source unirule:MF_00646 .
_:247346 up:source unirule:MF_00646 .
_:247347 up:source unirule:MF_00646 .
_:247348 up:source unirule:MF_00646 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0003746 ,
GO:0005737 ,
GO:0006414 ,
GO:0072344 ,
keyword:251 ,
keyword:648 ,
keyword:694 ,
keyword:820 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Elongation factor protein EfpL' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'efpL' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in peptide bond synthesis. Alleviates ribosome stalling at di-proline-containing sequences; in rare cases stalled nascent peptides lacking di-Pro can also be rescued.' .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Protein biosynthesis; polypeptide chain elongation.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the elongation factor P family. EfpL subfamily.' .
?case7 up:classifiedWith keyword:7 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Site_Annotation ;
rdfs:comment "Probably interacts with 3' end of the P-site tRNA" .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:247349 a rdf:Statement ;
up:attribution _:247331 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:247350 a rdf:Statement ;
up:attribution _:247332 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:247351 a rdf:Statement ;
up:attribution _:247333 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:247352 a rdf:Statement ;
up:attribution _:247334 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:247353 a rdf:Statement ;
up:attribution _:247335 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:247354 a rdf:Statement ;
up:attribution _:247336 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:247355 a rdf:Statement ;
up:attribution _:247337 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:247356 a rdf:Statement ;
up:attribution _:247338 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:247357 a rdf:Statement ;
up:attribution _:247339 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:251 .
_:247358 a rdf:Statement ;
up:attribution _:247340 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:247359 a rdf:Statement ;
up:attribution _:247341 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:247360 a rdf:Statement ;
up:attribution _:247342 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0072344 .
_:247361 a rdf:Statement ;
up:attribution _:247343 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003746 .
_:247362 a rdf:Statement ;
up:attribution _:247344 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006414 .
_:247363 a rdf:Statement ;
up:attribution _:247345 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:247364 a rdf:Statement ;
up:attribution _:247346 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:247365 a rdf:Statement ;
up:source unirule:MF_00646 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:247366 a rdf:Statement ;
up:attribution _:247347 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:247367 a rdf:Statement ;
up:source unirule:MF_00646 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:247368 a rdf:Statement ;
up:attribution _:247348 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00646
#Rule MF_00646 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2025-07-25
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00646 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00646a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00646a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00646a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00646a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00646a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP0A6N825 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6N827 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6N8MF_0064620 .
?templateMotifSequenceMatchRegionP0A6N825 faldo:begin ?templateMotifSequenceMatchBeginP0A6N826 .
?templateMotifSequenceMatchBeginP0A6N826 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6N821 ;
faldo:reference isoform:P0A6N8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6N827 edam:has_input signature:MF_00646 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064631 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6N8MF_0064622 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064630 .
?targetMotifMatchRegionMatchBeginMF_0064630 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064623 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0064631 edam:has_input signature:MF_00646 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetyl) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6N8MF_0064620, 1, (STRLEN(?templateMotifCigarP0A6N8MF_0064620) - STRLEN(REPLACE(?templateMotifCigarP0A6N8MF_0064620, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP0A6N821) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6N8MF_0064622, 1, (STRLEN(?targetMotifMatchCigarP0A6N8MF_0064622) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6N8MF_0064622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6N8MF_0064622, 1, (STRLEN(?targetMotifMatchCigarP0A6N8MF_0064622) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6N8MF_0064622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0064623) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00646a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionP0A6N840 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6N842 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6N8MF_0064635 .
?templateMotifSequenceMatchRegionP0A6N840 faldo:begin ?templateMotifSequenceMatchBeginP0A6N841 .
?templateMotifSequenceMatchBeginP0A6N841 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6N836 ;
faldo:reference isoform:P0A6N8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6N842 edam:has_input signature:MF_00646 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064646 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6N8MF_0064637 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064645 .
?targetMotifMatchRegionMatchBeginMF_0064645 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064638 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0064646 edam:has_input signature:MF_00646 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6N8MF_0064635, 1, (STRLEN(?templateMotifCigarP0A6N8MF_0064635) - STRLEN(REPLACE(?templateMotifCigarP0A6N8MF_0064635, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP0A6N836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6N8MF_0064637, 1, (STRLEN(?targetMotifMatchCigarP0A6N8MF_0064637) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6N8MF_0064637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6N8MF_0064637, 1, (STRLEN(?targetMotifMatchCigarP0A6N8MF_0064637) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6N8MF_0064637, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0064638) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs2t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00646a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:543 .
BIND(?this AS ?caseWithTag50) .
}
BIND(IF(BOUND(?tagacetyl), ?caseWithTag50, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
