| http://purl.uniprot.org/unirules/MF_00681#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:255898 up:source unirule:MF_00681 .
_:255899 up:source unirule:MF_00681 .
_:255900 up:source unirule:MF_00681 .
_:255901 up:source unirule:MF_00681 .
_:255902 up:source unirule:MF_00681 .
_:255903 up:source unirule:MF_00681 .
_:255904 up:source unirule:MF_00681 .
_:255905 up:source unirule:MF_00681 .
_:255906 up:source unirule:MF_00681 .
_:255907 up:source unirule:MF_00681 .
_:255908 up:source unirule:MF_00681 .
_:255909 up:source unirule:MF_00681 .
_:255910 up:source unirule:MF_00681 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0016830 ,
GO:2001120 ,
keyword:456 ,
keyword:704 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.3.153' ;
up:fullName '(5-formylfuran-3-yl)methyl phosphate synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '4-(hydroxymethyl)-2-furancarboxaldehyde-phosphate synthase' ;
up:shortName '4-HFC-P synthase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mfnB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the formation of 4-(hydroxymethyl)-2-furancarboxaldehyde phosphate (4-HFC-P) from two molecules of glyceraldehyde-3-P (GA-3-P).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; methanofuran biosynthesis.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MfnB family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with substrate' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:255911 a rdf:Statement ;
up:attribution _:255898 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:255912 a rdf:Statement ;
up:attribution _:255899 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:255913 a rdf:Statement ;
up:attribution _:255900 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:255914 a rdf:Statement ;
up:attribution _:255901 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:255915 a rdf:Statement ;
up:attribution _:255902 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:255916 a rdf:Statement ;
up:attribution _:255903 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:255917 a rdf:Statement ;
up:attribution _:255904 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:255918 a rdf:Statement ;
up:attribution _:255905 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:255919 a rdf:Statement ;
up:attribution _:255906 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:255920 a rdf:Statement ;
up:attribution _:255907 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016830 .
_:255921 a rdf:Statement ;
up:attribution _:255908 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:2001120 .
_:255922 a rdf:Statement ;
up:source unirule:MF_00681 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:255923 a rdf:Statement ;
up:attribution _:255909 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:255924 a rdf:Statement ;
up:source unirule:MF_00681 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:255925 a rdf:Statement ;
up:attribution _:255910 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00681
#Rule MF_00681 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00681 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00681a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00681a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00681a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00681a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00681a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00681a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionQ5849925 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5849927 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58499MF_0068120 .
?templateMotifSequenceMatchRegionQ5849925 faldo:begin ?templateMotifSequenceMatchBeginQ5849926 .
?templateMotifSequenceMatchBeginQ5849926 faldo:position ?templateMotifSequenceMatchBeginPositionQ5849921 ;
faldo:reference isoform:Q58499-1 .
?templateMotifSequenceProfileAlignmentOperationQ5849927 edam:has_input signature:MF_00681 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0068131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58499MF_0068122 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0068130 .
?targetMotifMatchRegionMatchBeginMF_0068130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0068123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0068131 edam:has_input signature:MF_00681 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58499MF_0068120, 1, (STRLEN(?templateMotifCigarQ58499MF_0068120) - STRLEN(REPLACE(?templateMotifCigarQ58499MF_0068120, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ5849921) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58499MF_0068122, 1, (STRLEN(?targetMotifMatchCigarQ58499MF_0068122) - STRLEN(REPLACE(?targetMotifMatchCigarQ58499MF_0068122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58499MF_0068122, 1, (STRLEN(?targetMotifMatchCigarQ58499MF_0068122) - STRLEN(REPLACE(?targetMotifMatchCigarQ58499MF_0068122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0068123) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00681a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionQ5849940 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5849942 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58499MF_0068135 .
?templateMotifSequenceMatchRegionQ5849940 faldo:begin ?templateMotifSequenceMatchBeginQ5849941 .
?templateMotifSequenceMatchBeginQ5849941 faldo:position ?templateMotifSequenceMatchBeginPositionQ5849936 ;
faldo:reference isoform:Q58499-1 .
?templateMotifSequenceProfileAlignmentOperationQ5849942 edam:has_input signature:MF_00681 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0068146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58499MF_0068137 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0068145 .
?targetMotifMatchRegionMatchBeginMF_0068145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0068138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0068146 edam:has_input signature:MF_00681 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58499MF_0068135, 1, (STRLEN(?templateMotifCigarQ58499MF_0068135) - STRLEN(REPLACE(?templateMotifCigarQ58499MF_0068135, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionQ5849936) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58499MF_0068137, 1, (STRLEN(?targetMotifMatchCigarQ58499MF_0068137) - STRLEN(REPLACE(?targetMotifMatchCigarQ58499MF_0068137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58499MF_0068137, 1, (STRLEN(?targetMotifMatchCigarQ58499MF_0068137) - STRLEN(REPLACE(?targetMotifMatchCigarQ58499MF_0068137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0068138) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00681a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
