| http://purl.uniprot.org/unirules/MF_00711#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:262952 up:source unirule:MF_00711 .
_:262953 up:source unirule:MF_00711 .
_:262954 up:source unirule:MF_00711 .
_:262955 up:source unirule:MF_00711 .
_:262956 up:source unirule:MF_00711 .
_:262957 up:source unirule:MF_00711 .
_:262958 up:source unirule:MF_00711 .
_:262959 up:source unirule:MF_00711 .
_:262960 up:source unirule:MF_00711 .
_:262961 up:source unirule:MF_00711 .
_:262962 up:source unirule:MF_00711 .
_:262963 up:source unirule:MF_00711 .
_:262964 up:source unirule:MF_00711 .
_:262965 up:source unirule:MF_00711 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0019464 ,
keyword:560 ,
keyword:663 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.4.4.2' ;
up:fullName 'Glycine dehydrogenase (decarboxylating)' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glycine cleavage system P-protein' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Glycine decarboxylase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Glycine dehydrogenase (aminomethyl-transferring)' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'gcvP' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'The glycine cleavage system is composed of four proteins: P, T, L and H.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GcvP family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
_:262966 a rdf:Statement ;
up:attribution _:262952 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:262967 a rdf:Statement ;
up:attribution _:262953 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:262968 a rdf:Statement ;
up:attribution _:262954 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:262969 a rdf:Statement ;
up:attribution _:262955 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:262970 a rdf:Statement ;
up:attribution _:262956 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:262971 a rdf:Statement ;
up:attribution _:262957 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:262972 a rdf:Statement ;
up:attribution _:262958 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:262973 a rdf:Statement ;
up:attribution _:262959 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:262974 a rdf:Statement ;
up:attribution _:262960 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:262975 a rdf:Statement ;
up:attribution _:262961 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:262976 a rdf:Statement ;
up:attribution _:262962 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:262977 a rdf:Statement ;
up:attribution _:262963 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:262978 a rdf:Statement ;
up:attribution _:262964 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019464 .
_:262979 a rdf:Statement ;
up:source unirule:MF_00711 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:262980 a rdf:Statement ;
up:attribution _:262965 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00711
#Rule MF_00711 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00711 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00711a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch21 faldo:location ?templateMotifSequenceMatchRegionP3319522 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3319524 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33195MF_0071117 .
?templateMotifSequenceMatchRegionP3319522 faldo:begin ?templateMotifSequenceMatchBeginP3319523 .
?templateMotifSequenceMatchBeginP3319523 faldo:position ?templateMotifSequenceMatchBeginPositionP3319518 ;
faldo:reference isoform:P33195-1 .
?templateMotifSequenceProfileAlignmentOperationP3319524 edam:has_input signature:MF_00711 ;
rdf:type edam:operation_0300 .
?targetMotifMatch25 faldo:location ?targetMotifMatchRegionMatch26 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0071128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33195MF_0071119 .
?targetMotifMatchRegionMatch26 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0071127 .
?targetMotifMatchRegionMatchBeginMF_0071127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0071120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0071128 edam:has_input signature:MF_00711 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33195MF_0071117, 1, (STRLEN(?templateMotifCigarP33195MF_0071117) - STRLEN(REPLACE(?templateMotifCigarP33195MF_0071117, CONCAT('^(?:-*[^-]){', STR(((708 - ?templateMotifSequenceMatchBeginPositionP3319518) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33195MF_0071119, 1, (STRLEN(?targetMotifMatchCigarP33195MF_0071119) - STRLEN(REPLACE(?targetMotifMatchCigarP33195MF_0071119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33195MF_0071119, 1, (STRLEN(?targetMotifMatchCigarP33195MF_0071119) - STRLEN(REPLACE(?targetMotifMatchCigarP33195MF_0071119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0071120) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00711a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
}
"xsd:string |
