| http://purl.uniprot.org/unirules/MF_00713#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:263410 up:source unirule:MF_00713 .
_:263411 up:source unirule:MF_00713 .
_:263412 up:source unirule:MF_00713 .
_:263413 up:source unirule:MF_00713 .
_:263414 up:source unirule:MF_00713 .
_:263415 up:source unirule:MF_00713 .
_:263416 up:source unirule:MF_00713 .
_:263417 up:source unirule:MF_00713 .
_:263418 up:source unirule:MF_00713 .
_:263419 up:source unirule:MF_00713 .
_:263420 up:source unirule:MF_00713 .
_:263421 up:source unirule:MF_00713 .
_:263422 up:source unirule:MF_00713 .
_:263423 up:source unirule:MF_00713 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0019464 ,
keyword:560 ,
keyword:663 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.4.4.2' ;
up:fullName 'Probable glycine dehydrogenase (decarboxylating) subunit 2' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glycine cleavage system P-protein subunit 2' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Glycine decarboxylase subunit 2' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Glycine dehydrogenase (aminomethyl-transferring) subunit 2' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'gcvPB' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment "The glycine cleavage system is composed of four proteins: P, T, L and H. In this organism, the P 'protein' is a heterodimer of two subunits." .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the GcvP family. C-terminal subunit subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
_:263424 a rdf:Statement ;
up:attribution _:263410 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:263425 a rdf:Statement ;
up:attribution _:263411 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:263426 a rdf:Statement ;
up:attribution _:263412 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:263427 a rdf:Statement ;
up:attribution _:263413 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:263428 a rdf:Statement ;
up:attribution _:263414 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:263429 a rdf:Statement ;
up:attribution _:263415 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:263430 a rdf:Statement ;
up:attribution _:263416 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:263431 a rdf:Statement ;
up:attribution _:263417 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:263432 a rdf:Statement ;
up:attribution _:263418 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:263433 a rdf:Statement ;
up:attribution _:263419 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:263434 a rdf:Statement ;
up:attribution _:263420 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:263435 a rdf:Statement ;
up:attribution _:263421 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:263436 a rdf:Statement ;
up:attribution _:263422 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019464 .
_:263437 a rdf:Statement ;
up:source unirule:MF_00713 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:263438 a rdf:Statement ;
up:attribution _:263423 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00713
#Rule MF_00713 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon17 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00713 .
?thisOrganism rdfs:subClassOf+ ?supertaxon17 .
BIND(URI(CONCAT(STR(?this), '#MF_00713a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionP5437723 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP5437725 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP54377MF_0071318 .
?templateMotifSequenceMatchRegionP5437723 faldo:begin ?templateMotifSequenceMatchBeginP5437724 .
?templateMotifSequenceMatchBeginP5437724 faldo:position ?templateMotifSequenceMatchBeginPositionP5437719 ;
faldo:reference isoform:P54377-1 .
?templateMotifSequenceProfileAlignmentOperationP5437725 edam:has_input signature:MF_00713 ;
rdf:type edam:operation_0300 .
?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0071329 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP54377MF_0071320 .
?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0071328 .
?targetMotifMatchRegionMatchBeginMF_0071328 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0071321 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0071329 edam:has_input signature:MF_00713 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP54377MF_0071318, 1, (STRLEN(?templateMotifCigarP54377MF_0071318) - STRLEN(REPLACE(?templateMotifCigarP54377MF_0071318, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP5437719) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP54377MF_0071320, 1, (STRLEN(?targetMotifMatchCigarP54377MF_0071320) - STRLEN(REPLACE(?targetMotifMatchCigarP54377MF_0071320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP54377MF_0071320, 1, (STRLEN(?targetMotifMatchCigarP54377MF_0071320) - STRLEN(REPLACE(?targetMotifMatchCigarP54377MF_0071320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0071321) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00713a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
}
"xsd:string |
