| http://purl.uniprot.org/unirules/MF_00729#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:267920 up:source unirule:MF_00729 .
_:267921 up:source unirule:MF_00729 .
_:267922 up:source unirule:MF_00729 .
_:267923 up:source unirule:MF_00729 .
_:267924 up:source unirule:MF_00729 .
_:267925 up:source unirule:MF_00729 .
_:267926 up:source unirule:MF_00729 .
_:267927 up:source unirule:MF_00729 .
_:267928 up:source unirule:MF_00729 .
_:267929 up:source unirule:MF_00729 .
_:267930 up:source unirule:MF_00729 .
_:267931 up:source unirule:MF_00729 .
_:267932 up:source unirule:MF_00729 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0004332 ,
GO:0006096 ,
keyword:324 ,
keyword:456 ,
keyword:704 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.2.13' ;
up:fullName 'Fructose-bisphosphate aldolase class 1' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Fructose-bisphosphate aldolase class I' ;
up:shortName 'FBP aldolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'fda' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 4/4.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I fructose-bisphosphate aldolase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with dihydroxyacetone-P' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:267933 a rdf:Statement ;
up:attribution _:267920 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:267934 a rdf:Statement ;
up:attribution _:267921 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:267935 a rdf:Statement ;
up:attribution _:267922 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:267936 a rdf:Statement ;
up:attribution _:267923 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:267937 a rdf:Statement ;
up:attribution _:267924 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:267938 a rdf:Statement ;
up:attribution _:267925 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:267939 a rdf:Statement ;
up:attribution _:267926 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:267940 a rdf:Statement ;
up:attribution _:267927 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:267941 a rdf:Statement ;
up:attribution _:267928 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:267942 a rdf:Statement ;
up:attribution _:267929 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004332 .
_:267943 a rdf:Statement ;
up:attribution _:267930 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:267944 a rdf:Statement ;
up:source unirule:MF_00729 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:267945 a rdf:Statement ;
up:attribution _:267931 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:267946 a rdf:Statement ;
up:source unirule:MF_00729 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:267947 a rdf:Statement ;
up:attribution _:267932 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00729
#Rule MF_00729 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00729 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00729a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00729a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00729a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00729a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00729a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionQ0715924 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0715926 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ07159MF_0072919 .
?templateMotifSequenceMatchRegionQ0715924 faldo:begin ?templateMotifSequenceMatchBeginQ0715925 .
?templateMotifSequenceMatchBeginQ0715925 faldo:position ?templateMotifSequenceMatchBeginPositionQ0715920 ;
faldo:reference isoform:Q07159-1 .
?templateMotifSequenceProfileAlignmentOperationQ0715926 edam:has_input signature:MF_00729 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0072930 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ07159MF_0072921 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0072929 .
?targetMotifMatchRegionMatchBeginMF_0072929 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0072922 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0072930 edam:has_input signature:MF_00729 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ07159MF_0072919, 1, (STRLEN(?templateMotifCigarQ07159MF_0072919) - STRLEN(REPLACE(?templateMotifCigarQ07159MF_0072919, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionQ0715920) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ07159MF_0072921, 1, (STRLEN(?targetMotifMatchCigarQ07159MF_0072921) - STRLEN(REPLACE(?targetMotifMatchCigarQ07159MF_0072921, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ07159MF_0072921, 1, (STRLEN(?targetMotifMatchCigarQ07159MF_0072921) - STRLEN(REPLACE(?targetMotifMatchCigarQ07159MF_0072921, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0072922) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00729a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionQ0715939 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0715941 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ07159MF_0072934 .
?templateMotifSequenceMatchRegionQ0715939 faldo:begin ?templateMotifSequenceMatchBeginQ0715940 .
?templateMotifSequenceMatchBeginQ0715940 faldo:position ?templateMotifSequenceMatchBeginPositionQ0715935 ;
faldo:reference isoform:Q07159-1 .
?templateMotifSequenceProfileAlignmentOperationQ0715941 edam:has_input signature:MF_00729 ;
rdf:type edam:operation_0300 .
?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0072945 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ07159MF_0072936 .
?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0072944 .
?targetMotifMatchRegionMatchBeginMF_0072944 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0072937 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0072945 edam:has_input signature:MF_00729 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ07159MF_0072934, 1, (STRLEN(?templateMotifCigarQ07159MF_0072934) - STRLEN(REPLACE(?templateMotifCigarQ07159MF_0072934, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionQ0715935) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ07159MF_0072936, 1, (STRLEN(?targetMotifMatchCigarQ07159MF_0072936) - STRLEN(REPLACE(?targetMotifMatchCigarQ07159MF_0072936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ07159MF_0072936, 1, (STRLEN(?targetMotifMatchCigarQ07159MF_0072936) - STRLEN(REPLACE(?targetMotifMatchCigarQ07159MF_0072936, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) .
BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0072937) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00729a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
}
"xsd:string |
