| http://purl.uniprot.org/unirules/MF_00807#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:288244 up:source unirule:MF_00807 .
_:288245 up:source unirule:MF_00807 .
_:288246 up:source unirule:MF_00807 .
_:288247 up:source unirule:MF_00807 .
_:288248 up:source unirule:MF_00807 .
_:288249 up:source unirule:MF_00807 .
_:288250 up:source unirule:MF_00807 .
_:288251 up:source unirule:MF_00807 .
_:288252 up:source unirule:MF_00807 .
_:288253 up:source unirule:MF_00807 .
_:288254 up:source unirule:MF_00807 .
_:288255 up:source unirule:MF_00807 .
_:288256 up:source unirule:MF_00807 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0008660 ,
GO:0018871 ,
keyword:378 ,
keyword:663 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.99.7' ;
up:fullName '1-aminocyclopropane-1-carboxylate deaminase' ;
up:shortName 'ACC deaminase' ,
'ACCD' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'acdS' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ACC deaminase/D-cysteine desulfhydrase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:288257 a rdf:Statement ;
up:attribution _:288244 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:288258 a rdf:Statement ;
up:attribution _:288245 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:288259 a rdf:Statement ;
up:attribution _:288246 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:288260 a rdf:Statement ;
up:attribution _:288247 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:288261 a rdf:Statement ;
up:attribution _:288248 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:288262 a rdf:Statement ;
up:attribution _:288249 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:288263 a rdf:Statement ;
up:attribution _:288250 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:288264 a rdf:Statement ;
up:attribution _:288251 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:288265 a rdf:Statement ;
up:attribution _:288252 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:288266 a rdf:Statement ;
up:attribution _:288253 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008660 .
_:288267 a rdf:Statement ;
up:attribution _:288254 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018871 .
_:288268 a rdf:Statement ;
up:source unirule:MF_00807 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:288269 a rdf:Statement ;
up:attribution _:288255 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:288270 a rdf:Statement ;
up:source unirule:MF_00807 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:288271 a rdf:Statement ;
up:attribution _:288256 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00807
#Rule MF_00807 Created by:? on:2005-03-08 Modified by:Edouard de Castro on:2023-11-28
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00807 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00807a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00807a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00807a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00807a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00807a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00807a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionQ5PWZ825 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5PWZ827 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5PWZ8MF_0080720 .
?templateMotifSequenceMatchRegionQ5PWZ825 faldo:begin ?templateMotifSequenceMatchBeginQ5PWZ826 .
?templateMotifSequenceMatchBeginQ5PWZ826 faldo:position ?templateMotifSequenceMatchBeginPositionQ5PWZ821 ;
faldo:reference isoform:Q5PWZ8-1 .
?templateMotifSequenceProfileAlignmentOperationQ5PWZ827 edam:has_input signature:MF_00807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0080731 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5PWZ8MF_0080722 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0080730 .
?targetMotifMatchRegionMatchBeginMF_0080730 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0080723 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0080731 edam:has_input signature:MF_00807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5PWZ8MF_0080720, 1, (STRLEN(?templateMotifCigarQ5PWZ8MF_0080720) - STRLEN(REPLACE(?templateMotifCigarQ5PWZ8MF_0080720, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionQ5PWZ821) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5PWZ8MF_0080722, 1, (STRLEN(?targetMotifMatchCigarQ5PWZ8MF_0080722) - STRLEN(REPLACE(?targetMotifMatchCigarQ5PWZ8MF_0080722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5PWZ8MF_0080722, 1, (STRLEN(?targetMotifMatchCigarQ5PWZ8MF_0080722) - STRLEN(REPLACE(?targetMotifMatchCigarQ5PWZ8MF_0080722, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0080723) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00807a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionQ5PWZ840 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5PWZ842 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5PWZ8MF_0080735 .
?templateMotifSequenceMatchRegionQ5PWZ840 faldo:begin ?templateMotifSequenceMatchBeginQ5PWZ841 .
?templateMotifSequenceMatchBeginQ5PWZ841 faldo:position ?templateMotifSequenceMatchBeginPositionQ5PWZ836 ;
faldo:reference isoform:Q5PWZ8-1 .
?templateMotifSequenceProfileAlignmentOperationQ5PWZ842 edam:has_input signature:MF_00807 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0080746 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5PWZ8MF_0080737 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0080745 .
?targetMotifMatchRegionMatchBeginMF_0080745 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0080738 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0080746 edam:has_input signature:MF_00807 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5PWZ8MF_0080735, 1, (STRLEN(?templateMotifCigarQ5PWZ8MF_0080735) - STRLEN(REPLACE(?templateMotifCigarQ5PWZ8MF_0080735, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionQ5PWZ836) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5PWZ8MF_0080737, 1, (STRLEN(?targetMotifMatchCigarQ5PWZ8MF_0080737) - STRLEN(REPLACE(?targetMotifMatchCigarQ5PWZ8MF_0080737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5PWZ8MF_0080737, 1, (STRLEN(?targetMotifMatchCigarQ5PWZ8MF_0080737) - STRLEN(REPLACE(?targetMotifMatchCigarQ5PWZ8MF_0080737, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0080738) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00807a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
