| http://purl.uniprot.org/unirules/MF_00830#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:294944 up:source unirule:MF_00830 .
_:294945 up:source unirule:MF_00830 .
_:294946 up:source unirule:MF_00830 .
_:294947 up:source unirule:MF_00830 .
_:294948 up:source unirule:MF_00830 .
_:294949 up:source unirule:MF_00830 .
_:294950 up:source unirule:MF_00830 .
_:294951 up:source unirule:MF_00830 .
_:294952 up:source unirule:MF_00830 .
_:294953 up:source unirule:MF_00830 .
_:294954 up:source unirule:MF_00830 .
_:294955 up:source unirule:MF_00830 .
_:294956 up:source unirule:MF_00830 .
_:294957 up:source unirule:MF_00830 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0006212 ,
GO:0016811 ,
GO:0019740 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.110' ;
up:fullName 'Ureidoacrylate amidohydrolase RutB' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rutB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Hydrolyzes ureidoacrylate to form aminoacrylate and carbamate. The carbamate hydrolyzes spontaneously, thereby releasing one of the nitrogen atoms of the pyrimidine ring as ammonia and one of its carbon atoms as CO2.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the isochorismatase family. RutB subfamily.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
_:294958 a rdf:Statement ;
up:attribution _:294944 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:294959 a rdf:Statement ;
up:attribution _:294945 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:294960 a rdf:Statement ;
up:attribution _:294946 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:294961 a rdf:Statement ;
up:attribution _:294947 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:294962 a rdf:Statement ;
up:attribution _:294948 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:294963 a rdf:Statement ;
up:attribution _:294949 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:294964 a rdf:Statement ;
up:attribution _:294950 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:294965 a rdf:Statement ;
up:attribution _:294951 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:294966 a rdf:Statement ;
up:attribution _:294952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016811 .
_:294967 a rdf:Statement ;
up:attribution _:294953 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006212 .
_:294968 a rdf:Statement ;
up:attribution _:294954 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019740 .
_:294969 a rdf:Statement ;
up:source unirule:MF_00830 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:294970 a rdf:Statement ;
up:attribution _:294955 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:294971 a rdf:Statement ;
up:source unirule:MF_00830 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:294972 a rdf:Statement ;
up:attribution _:294956 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:294973 a rdf:Statement ;
up:source unirule:MF_00830 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:294974 a rdf:Statement ;
up:attribution _:294957 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00830
#Rule MF_00830 Created by:? on:2010-11-02 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00830 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00830a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch33 faldo:location ?templateMotifSequenceMatchRegionP7589734 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7589736 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75897MF_0083029 .
?templateMotifSequenceMatchRegionP7589734 faldo:begin ?templateMotifSequenceMatchBeginP7589735 .
?templateMotifSequenceMatchBeginP7589735 faldo:position ?templateMotifSequenceMatchBeginPositionP7589730 ;
faldo:reference isoform:P75897-1 .
?templateMotifSequenceProfileAlignmentOperationP7589736 edam:has_input signature:MF_00830 ;
rdf:type edam:operation_0300 .
?targetMotifMatch37 faldo:location ?targetMotifMatchRegionMatch38 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0083040 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75897MF_0083031 .
?targetMotifMatchRegionMatch38 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0083039 .
?targetMotifMatchRegionMatchBeginMF_0083039 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083032 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0083040 edam:has_input signature:MF_00830 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75897MF_0083029, 1, (STRLEN(?templateMotifCigarP75897MF_0083029) - STRLEN(REPLACE(?templateMotifCigarP75897MF_0083029, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP7589730) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75897MF_0083031, 1, (STRLEN(?targetMotifMatchCigarP75897MF_0083031) - STRLEN(REPLACE(?targetMotifMatchCigarP75897MF_0083031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75897MF_0083031, 1, (STRLEN(?targetMotifMatchCigarP75897MF_0083031) - STRLEN(REPLACE(?targetMotifMatchCigarP75897MF_0083031, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0083032) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP7589749 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7589751 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75897MF_0083044 .
?templateMotifSequenceMatchRegionP7589749 faldo:begin ?templateMotifSequenceMatchBeginP7589750 .
?templateMotifSequenceMatchBeginP7589750 faldo:position ?templateMotifSequenceMatchBeginPositionP7589745 ;
faldo:reference isoform:P75897-1 .
?templateMotifSequenceProfileAlignmentOperationP7589751 edam:has_input signature:MF_00830 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0083055 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75897MF_0083046 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0083054 .
?targetMotifMatchRegionMatchBeginMF_0083054 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083047 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0083055 edam:has_input signature:MF_00830 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75897MF_0083044, 1, (STRLEN(?templateMotifCigarP75897MF_0083044) - STRLEN(REPLACE(?templateMotifCigarP75897MF_0083044, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP7589745) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75897MF_0083046, 1, (STRLEN(?targetMotifMatchCigarP75897MF_0083046) - STRLEN(REPLACE(?targetMotifMatchCigarP75897MF_0083046, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75897MF_0083046, 1, (STRLEN(?targetMotifMatchCigarP75897MF_0083046) - STRLEN(REPLACE(?targetMotifMatchCigarP75897MF_0083046, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0083047) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP7589764 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7589766 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP75897MF_0083059 .
?templateMotifSequenceMatchRegionP7589764 faldo:begin ?templateMotifSequenceMatchBeginP7589765 .
?templateMotifSequenceMatchBeginP7589765 faldo:position ?templateMotifSequenceMatchBeginPositionP7589760 ;
faldo:reference isoform:P75897-1 .
?templateMotifSequenceProfileAlignmentOperationP7589766 edam:has_input signature:MF_00830 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0083070 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP75897MF_0083061 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0083069 .
?targetMotifMatchRegionMatchBeginMF_0083069 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0083062 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0083070 edam:has_input signature:MF_00830 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP75897MF_0083059, 1, (STRLEN(?templateMotifCigarP75897MF_0083059) - STRLEN(REPLACE(?templateMotifCigarP75897MF_0083059, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP7589760) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP75897MF_0083061, 1, (STRLEN(?targetMotifMatchCigarP75897MF_0083061) - STRLEN(REPLACE(?targetMotifMatchCigarP75897MF_0083061, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP75897MF_0083061, 1, (STRLEN(?targetMotifMatchCigarP75897MF_0083061) - STRLEN(REPLACE(?targetMotifMatchCigarP75897MF_0083061, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0083062) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00830a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon74 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon74 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
