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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-33 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-57 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-35 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-72 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-77 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-75 |
| http://purl.uniprot.org/unirules/MF_00851#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00851#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_00851#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00851#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00851#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00851#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00851#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00851#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:303824 up:source unirule:MF_00851 . _:303825 up:source unirule:MF_00851 . _:303826 up:source unirule:MF_00851 . _:303827 up:source unirule:MF_00851 . _:303828 up:source unirule:MF_00851 . _:303829 up:source unirule:MF_00851 . _:303830 up:source unirule:MF_00851 . _:303831 up:source unirule:MF_00851 . _:303832 up:source unirule:MF_00851 . _:303833 up:source unirule:MF_00851 . _:303834 up:source unirule:MF_00851 . _:303835 up:source unirule:MF_00851 . _:303836 up:source unirule:MF_00851 . _:303837 up:source unirule:MF_00851 . _:303838 up:source unirule:MF_00851 . _:303839 up:source unirule:MF_00851 . _:303840 up:source unirule:MF_00851 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 ; up:classifiedWith GO:0006448 , GO:0031556 , keyword:428 , keyword:694 , keyword:699 , keyword:804 , keyword:805 , keyword:810 ; up:recommendedName ?name0 . ?name0 up:fullName 'Leader peptide SpeFL' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Arrest peptide SpeFL' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'speFL' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'A small protein (arrest peptide) encoded upstream of inducible ornithine carboxylase gene (speF) that controls expression of downstream genes (usually speF and potE) by transcriptional and translational attenuation.' . ?annotation4 a up:Subunit_Annotation ; rdfs:comment 'Binds ornithine in stalled 70S ribosomes, blocking the upper two-thirds of the exit tunnel. Contacts 23S rRNA and ribosomal proteins L4 and L22.' . ?annotation5 a up:Induction_Annotation ; rdfs:comment 'Induced by ornithine, repressed by putrescine. Part of the speFL-speF-potE operon.' . ?annotation6 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the speF operon leader peptide family.' . ?pfs7 up:annotation ?annotation8 . ?annotation8 faldo:begin ?pfsb9 ; faldo:end ?pfse10 ; rdf:type up:Motif_Annotation ; rdfs:comment 'Ornithine recognition loop' . ?pfsb9 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse10 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?pfs13 up:annotation ?annotation14 . ?annotation14 faldo:begin ?pfsb15 ; faldo:end ?pfse16 ; up:ligand ?ligand17 ; rdf:type up:Binding_Site_Annotation . ?pfsb15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?pfse16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?ligand17 rdfs:subClassOf chebi:46911 . _:303841 a rdf:Statement ; up:attribution _:303824 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:303842 a rdf:Statement ; up:attribution _:303825 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:303843 a rdf:Statement ; up:attribution _:303826 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:303844 a rdf:Statement ; up:attribution _:303827 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:303845 a rdf:Statement ; up:attribution _:303828 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:303846 a rdf:Statement ; up:attribution _:303829 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:303847 a rdf:Statement ; up:attribution _:303830 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:303848 a rdf:Statement ; up:attribution _:303831 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:428 . _:303849 a rdf:Statement ; up:attribution _:303832 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:694 . _:303850 a rdf:Statement ; up:attribution _:303833 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:303851 a rdf:Statement ; up:attribution _:303834 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:303852 a rdf:Statement ; up:attribution _:303835 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:810 . _:303853 a rdf:Statement ; up:attribution _:303836 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:699 . _:303854 a rdf:Statement ; up:attribution _:303837 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006448 . _:303855 a rdf:Statement ; up:attribution _:303838 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0031556 . _:303856 a rdf:Statement ; up:source unirule:MF_00851 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:303857 a rdf:Statement ; up:attribution _:303839 ; rdf:subject ?pfs7 ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:303858 a rdf:Statement ; up:source unirule:MF_00851 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . _:303859 a rdf:Statement ; up:attribution _:303840 ; rdf:subject ?pfs13 ; rdf:predicate up:annotation ; rdf:object ?annotation14 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00851 #Rule MF_00851 Created by:? on:2020-03-31 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00851 . ?thisOrganism rdfs:subClassOf+ taxon:1236 . BIND(URI(CONCAT(STR(?this), '#MF_00851a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00851a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00851a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00851a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_00851a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00851a6')) AS ?annotation6) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP0DTV725 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTV727 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0DTV7MF_0085120 . ?templateMotifSequenceMatchRegionP0DTV725 faldo:begin ?templateMotifSequenceMatchBeginP0DTV726 . ?templateMotifSequenceMatchBeginP0DTV726 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTV721 ; faldo:reference isoform:P0DTV7-1 . ?templateMotifSequenceProfileAlignmentOperationP0DTV727 edam:has_input signature:MF_00851 ; rdf:type edam:operation_0300 . ?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0085131 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0DTV7MF_0085122 . ?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0085130 . ?targetMotifMatchRegionMatchBeginMF_0085130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0085123 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0085131 edam:has_input signature:MF_00851 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTV7MF_0085120, 1, (STRLEN(?templateMotifCigarP0DTV7MF_0085120) - STRLEN(REPLACE(?templateMotifCigarP0DTV7MF_0085120, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP0DTV721) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTV7MF_0085122, 1, (STRLEN(?targetMotifMatchCigarP0DTV7MF_0085122) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTV7MF_0085122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTV7MF_0085122, 1, (STRLEN(?targetMotifMatchCigarP0DTV7MF_0085122) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTV7MF_0085122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) . BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0085123) - 1) AS ?thisPositionOn11) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTV7MF_0085120, 1, (STRLEN(?templateMotifCigarP0DTV7MF_0085120) - STRLEN(REPLACE(?templateMotifCigarP0DTV7MF_0085120, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP0DTV721) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTV7MF_0085122, 1, (STRLEN(?targetMotifMatchCigarP0DTV7MF_0085122) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTV7MF_0085122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTV7MF_0085122, 1, (STRLEN(?targetMotifMatchCigarP0DTV7MF_0085122) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTV7MF_0085122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) . BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0085123) - 1) AS ?thisPositionOn12) . BIND(?this AS ?pfs1t36) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) . FILTER (REGEX('HIRR[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn11, (?thisPositionOn12 - ?thisPositionOn11)))) . BIND(URI(CONCAT(STR(?this), '#MF_00851a8')) AS ?annotation8) . BIND(?this AS ?pfs7) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP0DTV742 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTV744 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP0DTV7MF_0085137 . ?templateMotifSequenceMatchRegionP0DTV742 faldo:begin ?templateMotifSequenceMatchBeginP0DTV743 . ?templateMotifSequenceMatchBeginP0DTV743 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTV738 ; faldo:reference isoform:P0DTV7-1 . ?templateMotifSequenceProfileAlignmentOperationP0DTV744 edam:has_input signature:MF_00851 ; rdf:type edam:operation_0300 . ?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0085148 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP0DTV7MF_0085139 . ?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0085147 . ?targetMotifMatchRegionMatchBeginMF_0085147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0085140 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0085148 edam:has_input signature:MF_00851 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTV7MF_0085137, 1, (STRLEN(?templateMotifCigarP0DTV7MF_0085137) - STRLEN(REPLACE(?templateMotifCigarP0DTV7MF_0085137, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP0DTV738) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTV7MF_0085139, 1, (STRLEN(?targetMotifMatchCigarP0DTV7MF_0085139) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTV7MF_0085139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTV7MF_0085139, 1, (STRLEN(?targetMotifMatchCigarP0DTV7MF_0085139) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTV7MF_0085139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0085140) - 1) AS ?thisPositionOn18) . BIND(?thisPositionOn18 AS ?thisPositionOn19) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'R')) . BIND(URI(CONCAT(STR(?this), '#MF_00851a14')) AS ?annotation14) . BIND(?this AS ?pfs13) . } } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00851 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00851#construct |