| http://purl.uniprot.org/unirules/MF_00856#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:305693 up:source unirule:MF_00856 .
_:305694 up:source unirule:MF_00856 .
_:305695 up:source unirule:MF_00856 .
_:305696 up:source unirule:MF_00856 .
_:305697 up:source unirule:MF_00856 .
_:305698 up:source unirule:MF_00856 .
_:305699 up:source unirule:MF_00856 .
_:305700 up:source unirule:MF_00856 .
_:305701 up:source unirule:MF_00856 .
_:305702 up:source unirule:MF_00856 .
_:305703 up:source unirule:MF_00856 .
_:305704 up:source unirule:MF_00856 .
_:305705 up:source unirule:MF_00856 .
_:305706 up:source unirule:MF_00856 .
_:305707 up:source unirule:MF_00856 .
_:305708 up:source unirule:MF_00856 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0005737 ,
GO:0015977 ,
GO:0110102 ,
keyword:120 ,
keyword:143 ,
keyword:602 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'RuBisCO accumulation factor 1' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'raf1' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'A major RuBisCO chaperone. Acts after GroEL-GroES chaperonin to fold and/or assemble the large subunit of RuBisCO (ccbL, rbcL). Cooperates with RbcX in RbcL folding, plays the major role in assembly of dimers into RbcL(8)-Raf1(8) intermediate complexes. RbcS replaces Raf1, leading to holoenzyme formation.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Forms an RbcL(8)-Raf1(8) complex. Forms complexes of many stoichiometries with RbcL with and without RbcS. RbcX and Raf1 can bind simultaneously to RbcL.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Domain_Annotation ;
rdfs:comment 'Has 3 domains, the N-terminal alpha-helical domain, an extended flexible linker and the C-terminal beta-sheet domain. The 2 C-terminal beta-sheet domains are swapped and pack against each other to form the dimer interface.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RAF family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'N-terminal alpha-helix' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'C-terminal beta-sheet' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:305709 a rdf:Statement ;
up:attribution _:305693 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:305710 a rdf:Statement ;
up:attribution _:305694 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:305711 a rdf:Statement ;
up:attribution _:305695 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:305712 a rdf:Statement ;
up:attribution _:305696 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:305713 a rdf:Statement ;
up:attribution _:305697 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:305714 a rdf:Statement ;
up:attribution _:305698 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:305715 a rdf:Statement ;
up:attribution _:305699 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:305716 a rdf:Statement ;
up:attribution _:305700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:120 .
_:305717 a rdf:Statement ;
up:attribution _:305701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:143 .
_:305718 a rdf:Statement ;
up:attribution _:305702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:305719 a rdf:Statement ;
up:attribution _:305703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:602 .
_:305720 a rdf:Statement ;
up:attribution _:305704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015977 .
_:305721 a rdf:Statement ;
up:attribution _:305705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:305722 a rdf:Statement ;
up:attribution _:305706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0110102 .
_:305723 a rdf:Statement ;
up:source unirule:MF_00856 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:305724 a rdf:Statement ;
up:attribution _:305707 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:305725 a rdf:Statement ;
up:source unirule:MF_00856 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:305726 a rdf:Statement ;
up:attribution _:305708 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00856
#Rule MF_00856 Created by:? on:2020-09-01 Modified by:Edouard de Castro on:2023-02-17
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00856 .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(URI(CONCAT(STR(?this), '#MF_00856a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00856a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00856a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00856a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00856a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00856a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionQ8YLP625 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8YLP627 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8YLP6MF_0085620 .
?templateMotifSequenceMatchRegionQ8YLP625 faldo:begin ?templateMotifSequenceMatchBeginQ8YLP626 .
?templateMotifSequenceMatchBeginQ8YLP626 faldo:position ?templateMotifSequenceMatchBeginPositionQ8YLP621 ;
faldo:reference isoform:Q8YLP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8YLP627 edam:has_input signature:MF_00856 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0085631 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8YLP6MF_0085622 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0085630 .
?targetMotifMatchRegionMatchBeginMF_0085630 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0085623 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0085631 edam:has_input signature:MF_00856 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YLP6MF_0085620, 1, (STRLEN(?templateMotifCigarQ8YLP6MF_0085620) - STRLEN(REPLACE(?templateMotifCigarQ8YLP6MF_0085620, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ8YLP621) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085622, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085622) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085622, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085622) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0085623) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YLP6MF_0085620, 1, (STRLEN(?templateMotifCigarQ8YLP6MF_0085620) - STRLEN(REPLACE(?templateMotifCigarQ8YLP6MF_0085620, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionQ8YLP621) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085622, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085622) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085622, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085622) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085622, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0085623) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_00856a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionQ8YLP642 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8YLP644 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8YLP6MF_0085637 .
?templateMotifSequenceMatchRegionQ8YLP642 faldo:begin ?templateMotifSequenceMatchBeginQ8YLP643 .
?templateMotifSequenceMatchBeginQ8YLP643 faldo:position ?templateMotifSequenceMatchBeginPositionQ8YLP638 ;
faldo:reference isoform:Q8YLP6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8YLP644 edam:has_input signature:MF_00856 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0085648 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8YLP6MF_0085639 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0085647 .
?targetMotifMatchRegionMatchBeginMF_0085647 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0085640 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0085648 edam:has_input signature:MF_00856 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YLP6MF_0085637, 1, (STRLEN(?templateMotifCigarQ8YLP6MF_0085637) - STRLEN(REPLACE(?templateMotifCigarQ8YLP6MF_0085637, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionQ8YLP638) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085639, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085639) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085639, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085639, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085639) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085639, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0085640) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8YLP6MF_0085637, 1, (STRLEN(?templateMotifCigarQ8YLP6MF_0085637) - STRLEN(REPLACE(?templateMotifCigarQ8YLP6MF_0085637, CONCAT('^(?:-*[^-]){', STR(((347 - ?templateMotifSequenceMatchBeginPositionQ8YLP638) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085639, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085639) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085639, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8YLP6MF_0085639, 1, (STRLEN(?targetMotifMatchCigarQ8YLP6MF_0085639) - STRLEN(REPLACE(?targetMotifMatchCigarQ8YLP6MF_0085639, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0085640) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_00856a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
}
"xsd:string |
