| http://purl.uniprot.org/unirules/MF_00945#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:329369 up:source unirule:MF_00945 .
_:329370 up:source unirule:MF_00945 .
_:329371 up:source unirule:MF_00945 .
_:329372 up:source unirule:MF_00945 .
_:329373 up:source unirule:MF_00945 .
_:329374 up:source unirule:MF_00945 .
_:329375 up:source unirule:MF_00945 .
_:329376 up:source unirule:MF_00945 .
_:329377 up:source unirule:MF_00945 .
_:329378 up:source unirule:MF_00945 .
_:329379 up:source unirule:MF_00945 .
_:329380 up:source unirule:MF_00945 .
_:329381 up:source unirule:MF_00945 .
_:329382 up:source unirule:MF_00945 .
_:329383 up:source unirule:MF_00945 .
_:329384 up:source unirule:MF_00945 .
_:329385 up:source unirule:MF_00945 .
?this up:annotation ?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0005737 ,
GO:0006353 ,
keyword:804 ,
keyword:805 ,
keyword:806 ,
keyword:963 .
?gene0 skos:prefLabel 'nusA' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NusA family.' .
?case5 up:classifiedWith GO:0003723 ,
GO:0031564 ,
keyword:694 ,
keyword:889 .
?case6 up:classifiedWith keyword:677 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Repeat_Annotation ;
rdfs:comment '1' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Repeat_Annotation ;
rdfs:comment '2' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Region_Annotation ;
rdfs:comment '2 X 51 AA approximate repeats' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:329386 a rdf:Statement ;
up:attribution _:329369 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:329387 a rdf:Statement ;
up:attribution _:329370 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:329388 a rdf:Statement ;
up:attribution _:329371 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:329389 a rdf:Statement ;
up:attribution _:329372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:329390 a rdf:Statement ;
up:attribution _:329373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:329391 a rdf:Statement ;
up:attribution _:329374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:329392 a rdf:Statement ;
up:attribution _:329375 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:806 .
_:329393 a rdf:Statement ;
up:attribution _:329376 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006353 .
_:329394 a rdf:Statement ;
up:attribution _:329377 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:329395 a rdf:Statement ;
up:attribution _:329378 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:329396 a rdf:Statement ;
up:attribution _:329379 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:889 .
_:329397 a rdf:Statement ;
up:attribution _:329380 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:329398 a rdf:Statement ;
up:attribution _:329381 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031564 .
_:329399 a rdf:Statement ;
up:attribution _:329382 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:329400 a rdf:Statement ;
up:source unirule:MF_00945 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:329401 a rdf:Statement ;
up:attribution _:329383 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:329402 a rdf:Statement ;
up:source unirule:MF_00945 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:329403 a rdf:Statement ;
up:attribution _:329384 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:329404 a rdf:Statement ;
up:source unirule:MF_00945 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:329405 a rdf:Statement ;
up:attribution _:329385 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00945
#Rule MF_00945 Created by:? on:2013-02-28 Modified by:Edouard de Castro on:2023-06-01
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00945_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00945_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_00945a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00945a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP0AFF630 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFF632 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFF6MF_00945_B25 .
?templateMotifSequenceMatchRegionP0AFF630 faldo:begin ?templateMotifSequenceMatchBeginP0AFF631 .
?templateMotifSequenceMatchBeginP0AFF631 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFF626 ;
faldo:reference isoform:P0AFF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFF632 edam:has_input signature:MF_00945_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00945_B36 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFF6MF_00945_B27 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00945_B35 .
?targetMotifMatchRegionMatchBeginMF_00945_B35 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00945_B28 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00945_B36 edam:has_input signature:MF_00945_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFF6MF_00945_B25, 1, (STRLEN(?templateMotifCigarP0AFF6MF_00945_B25) - STRLEN(REPLACE(?templateMotifCigarP0AFF6MF_00945_B25, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP0AFF626) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B27, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B27) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B27, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B27, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B27) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B27, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_00945_B28) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFF6MF_00945_B25, 1, (STRLEN(?templateMotifCigarP0AFF6MF_00945_B25) - STRLEN(REPLACE(?templateMotifCigarP0AFF6MF_00945_B25, CONCAT('^(?:-*[^-]){', STR(((414 - ?templateMotifSequenceMatchBeginPositionP0AFF626) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B27, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B27) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B27, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B27, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B27) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B27, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_00945_B28) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_00945a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionP0AFF647 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFF649 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFF6MF_00945_B42 .
?templateMotifSequenceMatchRegionP0AFF647 faldo:begin ?templateMotifSequenceMatchBeginP0AFF648 .
?templateMotifSequenceMatchBeginP0AFF648 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFF643 ;
faldo:reference isoform:P0AFF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFF649 edam:has_input signature:MF_00945_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00945_B53 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFF6MF_00945_B44 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00945_B52 .
?targetMotifMatchRegionMatchBeginMF_00945_B52 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00945_B45 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00945_B53 edam:has_input signature:MF_00945_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFF6MF_00945_B42, 1, (STRLEN(?templateMotifCigarP0AFF6MF_00945_B42) - STRLEN(REPLACE(?templateMotifCigarP0AFF6MF_00945_B42, CONCAT('^(?:-*[^-]){', STR(((439 - ?templateMotifSequenceMatchBeginPositionP0AFF643) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B44, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B44) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B44, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B44, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B44) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B44, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_00945_B45) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFF6MF_00945_B42, 1, (STRLEN(?templateMotifCigarP0AFF6MF_00945_B42) - STRLEN(REPLACE(?templateMotifCigarP0AFF6MF_00945_B42, CONCAT('^(?:-*[^-]){', STR(((489 - ?templateMotifSequenceMatchBeginPositionP0AFF643) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B44, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B44) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B44, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B44, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B44) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B44, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_00945_B45) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_00945a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP0AFF664 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AFF666 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AFF6MF_00945_B59 .
?templateMotifSequenceMatchRegionP0AFF664 faldo:begin ?templateMotifSequenceMatchBeginP0AFF665 .
?templateMotifSequenceMatchBeginP0AFF665 faldo:position ?templateMotifSequenceMatchBeginPositionP0AFF660 ;
faldo:reference isoform:P0AFF6-1 .
?templateMotifSequenceProfileAlignmentOperationP0AFF666 edam:has_input signature:MF_00945_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00945_B70 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AFF6MF_00945_B61 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00945_B69 .
?targetMotifMatchRegionMatchBeginMF_00945_B69 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00945_B62 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00945_B70 edam:has_input signature:MF_00945_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFF6MF_00945_B59, 1, (STRLEN(?templateMotifCigarP0AFF6MF_00945_B59) - STRLEN(REPLACE(?templateMotifCigarP0AFF6MF_00945_B59, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP0AFF660) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B61, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B61) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B61, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B61, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B61) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B61, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_00945_B62) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AFF6MF_00945_B59, 1, (STRLEN(?templateMotifCigarP0AFF6MF_00945_B59) - STRLEN(REPLACE(?templateMotifCigarP0AFF6MF_00945_B59, CONCAT('^(?:-*[^-]){', STR(((489 - ?templateMotifSequenceMatchBeginPositionP0AFF660) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B61, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B61) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B61, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AFF6MF_00945_B61, 1, (STRLEN(?targetMotifMatchCigarP0AFF6MF_00945_B61) - STRLEN(REPLACE(?targetMotifMatchCigarP0AFF6MF_00945_B61, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_00945_B62) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_00945a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(?this AS ?case6) .
}
}
"xsd:string |
