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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-68 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-44 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-20 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-45 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-21 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-69 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-66 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-42 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-67 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-43 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-88 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-64 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-40 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-89 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-65 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-41 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-86 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-62 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-87 |
| http://purl.uniprot.org/unirules/MF_00949#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00949#construct-template-63 |
| http://purl.uniprot.org/unirules/MF_00949#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00949#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00949#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00949#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00949#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00949#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:330296 up:source unirule:MF_00949 . _:330297 up:source unirule:MF_00949 . _:330298 up:source unirule:MF_00949 . _:330299 up:source unirule:MF_00949 . _:330300 up:source unirule:MF_00949 . _:330301 up:source unirule:MF_00949 . _:330302 up:source unirule:MF_00949 . _:330303 up:source unirule:MF_00949 . _:330304 up:source unirule:MF_00949 . _:330305 up:source unirule:MF_00949 . _:330306 up:source unirule:MF_00949 . _:330307 up:source unirule:MF_00949 . _:330308 up:source unirule:MF_00949 . _:330309 up:source unirule:MF_00949 . _:330310 up:source unirule:MF_00949 . ?this up:annotation ?annotation2 , ?annotation3 , ?annotation4 ; up:classifiedWith GO:0006355 , keyword:804 , keyword:805 ; up:recommendedName ?name0 . ?name0 up:fullName 'Transcription elongation factor Spt4' ; rdf:type up:Structured_Name . ?gene1 skos:prefLabel 'spt4' . ?annotation2 a up:Function_Annotation ; rdfs:comment 'Stimulates transcription elongation.' . ?annotation3 a up:Subunit_Annotation ; rdfs:comment 'Heterodimer composed of Spt4 and Spt5.' . ?annotation4 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the archaeal Spt4 family.' . ?case5 up:classifiedWith GO:0008270 , keyword:479 , keyword:862 . ?pfs6 up:annotation ?annotation7 , ?annotation13 , ?annotation19 , ?annotation25 . ?annotation7 faldo:begin ?pfsb8 ; faldo:end ?pfse9 ; up:ligand ?ligand10 ; rdf:type up:Binding_Site_Annotation . ?pfsb8 faldo:position ?thisPositionOn11 ; rdf:type faldo:ExactPosition . ?pfse9 faldo:position ?thisPositionOn12 ; rdf:type faldo:ExactPosition . ?ligand10 rdfs:subClassOf chebi:29105 . ?annotation13 faldo:begin ?pfsb14 ; faldo:end ?pfse15 ; up:ligand ?ligand16 ; rdf:type up:Binding_Site_Annotation . ?pfsb14 faldo:position ?thisPositionOn17 ; rdf:type faldo:ExactPosition . ?pfse15 faldo:position ?thisPositionOn18 ; rdf:type faldo:ExactPosition . ?ligand16 rdfs:subClassOf chebi:29105 . ?annotation19 faldo:begin ?pfsb20 ; faldo:end ?pfse21 ; up:ligand ?ligand22 ; rdf:type up:Binding_Site_Annotation . ?pfsb20 faldo:position ?thisPositionOn23 ; rdf:type faldo:ExactPosition . ?pfse21 faldo:position ?thisPositionOn24 ; rdf:type faldo:ExactPosition . ?ligand22 rdfs:subClassOf chebi:29105 . ?annotation25 faldo:begin ?pfsb26 ; faldo:end ?pfse27 ; up:ligand ?ligand28 ; rdf:type up:Binding_Site_Annotation . ?pfsb26 faldo:position ?thisPositionOn29 ; rdf:type faldo:ExactPosition . ?pfse27 faldo:position ?thisPositionOn30 ; rdf:type faldo:ExactPosition . ?ligand28 rdfs:subClassOf chebi:29105 . _:330311 a rdf:Statement ; up:attribution _:330296 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:330312 a rdf:Statement ; up:attribution _:330297 ; rdf:subject ?gene1 ; rdf:predicate up:encodedBy ; rdf:object ?gene1 . _:330313 a rdf:Statement ; up:attribution _:330298 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation2 . _:330314 a rdf:Statement ; up:attribution _:330299 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:330315 a rdf:Statement ; up:attribution _:330300 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:330316 a rdf:Statement ; up:attribution _:330301 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:804 . _:330317 a rdf:Statement ; up:attribution _:330302 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:805 . _:330318 a rdf:Statement ; up:attribution _:330303 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0006355 . _:330319 a rdf:Statement ; up:attribution _:330304 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:330320 a rdf:Statement ; up:attribution _:330305 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object keyword:862 . _:330321 a rdf:Statement ; up:attribution _:330306 ; rdf:subject ?case5 ; rdf:predicate up:classifiedWith ; rdf:object GO:0008270 . _:330322 a rdf:Statement ; up:source unirule:MF_00949 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:330323 a rdf:Statement ; up:attribution _:330307 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:330324 a rdf:Statement ; up:source unirule:MF_00949 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:330325 a rdf:Statement ; up:attribution _:330308 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation13 . _:330326 a rdf:Statement ; up:source unirule:MF_00949 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:330327 a rdf:Statement ; up:attribution _:330309 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation19 . _:330328 a rdf:Statement ; up:source unirule:MF_00949 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . _:330329 a rdf:Statement ; up:attribution _:330310 ; rdf:subject ?pfs6 ; rdf:predicate up:annotation ; rdf:object ?annotation25 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00949 #Rule MF_00949 Created by:? on:2013-03-07 Modified by:Edouard de Castro on:2022-11-19 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00949 . ?thisOrganism rdfs:subClassOf+ taxon:2157 . BIND(URI(CONCAT(STR(?this), '#MF_00949a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00949a2')) AS ?annotation2) . BIND(URI(CONCAT(STR(?this), '#MF_00949a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_00949a4')) AS ?annotation4) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionQ5783936 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5783938 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarQ57839MF_0094931 . ?templateMotifSequenceMatchRegionQ5783936 faldo:begin ?templateMotifSequenceMatchBeginQ5783937 . ?templateMotifSequenceMatchBeginQ5783937 faldo:position ?templateMotifSequenceMatchBeginPositionQ5783932 ; faldo:reference isoform:Q57839-1 . ?templateMotifSequenceProfileAlignmentOperationQ5783938 edam:has_input signature:MF_00949 ; rdf:type edam:operation_0300 . ?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0094942 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarQ57839MF_0094933 . ?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0094941 . ?targetMotifMatchRegionMatchBeginMF_0094941 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0094934 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0094942 edam:has_input signature:MF_00949 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFTGRP_1) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57839MF_0094931, 1, (STRLEN(?templateMotifCigarQ57839MF_0094931) - STRLEN(REPLACE(?templateMotifCigarQ57839MF_0094931, CONCAT('^(?:-*[^-]){', STR(((4 - ?templateMotifSequenceMatchBeginPositionQ5783932) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) . BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0094934) - 1) AS ?thisPositionOn11) . BIND(?thisPositionOn11 AS ?thisPositionOn12) . BIND(?this AS ?pfs1t45) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb8) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse9) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57839MF_0094931, 1, (STRLEN(?templateMotifCigarQ57839MF_0094931) - STRLEN(REPLACE(?templateMotifCigarQ57839MF_0094931, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionQ5783932) + 1)), '}'), '')))), '[a-z]', '')) AS ?step146) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step146), '}'), '')))), '[^-]', ''))) AS ?step247) . BIND(((?step247 + ?targetMotifMatchRegionMatchBeginPositionMF_0094934) - 1) AS ?thisPositionOn17) . BIND(?thisPositionOn17 AS ?thisPositionOn18) . BIND(?this AS ?pfs1t48) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57839MF_0094931, 1, (STRLEN(?templateMotifCigarQ57839MF_0094931) - STRLEN(REPLACE(?templateMotifCigarQ57839MF_0094931, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ5783932) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) . BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0094934) - 1) AS ?thisPositionOn23) . BIND(?thisPositionOn23 AS ?thisPositionOn24) . BIND(?this AS ?pfs1t51) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57839MF_0094931, 1, (STRLEN(?templateMotifCigarQ57839MF_0094931) - STRLEN(REPLACE(?templateMotifCigarQ57839MF_0094931, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionQ5783932) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57839MF_0094933, 1, (STRLEN(?targetMotifMatchCigarQ57839MF_0094933) - STRLEN(REPLACE(?targetMotifMatchCigarQ57839MF_0094933, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) . BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0094934) - 1) AS ?thisPositionOn29) . BIND(?thisPositionOn29 AS ?thisPositionOn30) . BIND(?this AS ?pfs1t54) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) . FILTER (REGEX('[CH]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1))) . BIND(?this AS ?pfs6) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag55) . } BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag55, ?UNBOUND_VARIABLE) AS ?case5) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_00949 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00949#construct |