| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-71 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-70 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-36 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-76 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-75 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-74 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-73 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-79 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-78 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-77 |
| http://purl.uniprot.org/unirules/MF_00965#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_00965#construct-template-80 |
| http://purl.uniprot.org/unirules/MF_00965#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_00965#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_00965#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_00965#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_00965#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_00965#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:336270 up:source unirule:MF_00965 .
_:336271 up:source unirule:MF_00965 .
_:336272 up:source unirule:MF_00965 .
_:336273 up:source unirule:MF_00965 .
_:336274 up:source unirule:MF_00965 .
_:336275 up:source unirule:MF_00965 .
_:336276 up:source unirule:MF_00965 .
_:336277 up:source unirule:MF_00965 .
_:336278 up:source unirule:MF_00965 .
_:336279 up:source unirule:MF_00965 .
_:336280 up:source unirule:MF_00965 .
_:336281 up:source unirule:MF_00965 .
_:336282 up:source unirule:MF_00965 .
_:336283 up:source unirule:MF_00965 .
_:336284 up:source unirule:MF_00965 .
_:336285 up:source unirule:MF_00965 .
_:336286 up:source unirule:MF_00965 .
_:336287 up:source unirule:MF_00965 .
_:336288 up:source unirule:MF_00965 .
_:336289 up:source unirule:MF_00965 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000027 ,
GO:0003723 ,
GO:0005524 ,
GO:0005737 ,
GO:0034458 ,
keyword:347 ,
keyword:378 ,
keyword:547 ,
keyword:67 ,
keyword:690 ,
keyword:694 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.4.13' ;
up:fullName 'ATP-dependent RNA helicase DbpA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dbpA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment "DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Domain_Annotation ;
rdfs:comment 'Contains an N-terminal domain that binds non-specifically to RNA and a C-terminal domain that binds specifically and tightly to hairpin 92 of 23S rRNA.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DEAD box helicase family. DbpA subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Involved in 23S rRNA binding' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:336290 a rdf:Statement ;
up:attribution _:336270 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:336291 a rdf:Statement ;
up:attribution _:336271 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:336292 a rdf:Statement ;
up:attribution _:336272 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:336293 a rdf:Statement ;
up:attribution _:336273 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:336294 a rdf:Statement ;
up:attribution _:336274 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:336295 a rdf:Statement ;
up:attribution _:336275 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:336296 a rdf:Statement ;
up:attribution _:336276 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:336297 a rdf:Statement ;
up:attribution _:336277 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:336298 a rdf:Statement ;
up:attribution _:336278 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:336299 a rdf:Statement ;
up:attribution _:336279 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:347 .
_:336300 a rdf:Statement ;
up:attribution _:336280 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:336301 a rdf:Statement ;
up:attribution _:336281 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:336302 a rdf:Statement ;
up:attribution _:336282 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:690 .
_:336303 a rdf:Statement ;
up:attribution _:336283 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:336304 a rdf:Statement ;
up:attribution _:336284 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:336305 a rdf:Statement ;
up:attribution _:336285 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034458 .
_:336306 a rdf:Statement ;
up:attribution _:336286 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:336307 a rdf:Statement ;
up:attribution _:336287 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000027 .
_:336308 a rdf:Statement ;
up:attribution _:336288 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:336309 a rdf:Statement ;
up:source unirule:MF_00965 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:336310 a rdf:Statement ;
up:attribution _:336289 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00965
#Rule MF_00965 Created by:? on:2013-06-12 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00965 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00965a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00965a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00965a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00965a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00965a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00965a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP4230520 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4230522 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42305MF_0096515 .
?templateMotifSequenceMatchRegionP4230520 faldo:begin ?templateMotifSequenceMatchBeginP4230521 .
?templateMotifSequenceMatchBeginP4230521 faldo:position ?templateMotifSequenceMatchBeginPositionP4230516 ;
faldo:reference isoform:P42305-1 .
?templateMotifSequenceProfileAlignmentOperationP4230522 edam:has_input signature:MF_00965 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0096526 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42305MF_0096517 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0096525 .
?targetMotifMatchRegionMatchBeginMF_0096525 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0096518 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0096526 edam:has_input signature:MF_00965 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42305MF_0096515, 1, (STRLEN(?templateMotifCigarP42305MF_0096515) - STRLEN(REPLACE(?templateMotifCigarP42305MF_0096515, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP4230516) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42305MF_0096517, 1, (STRLEN(?targetMotifMatchCigarP42305MF_0096517) - STRLEN(REPLACE(?targetMotifMatchCigarP42305MF_0096517, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42305MF_0096517, 1, (STRLEN(?targetMotifMatchCigarP42305MF_0096517) - STRLEN(REPLACE(?targetMotifMatchCigarP42305MF_0096517, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0096518) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_00965a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
| http://purl.uniprot.org/unirules/MF_00965 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_00965#construct |
