| http://purl.uniprot.org/unirules/MF_00974#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:339470 up:source unirule:MF_00974 .
_:339471 up:source unirule:MF_00974 .
_:339472 up:source unirule:MF_00974 .
_:339473 up:source unirule:MF_00974 .
_:339474 up:source unirule:MF_00974 .
_:339475 up:source unirule:MF_00974 .
_:339476 up:source unirule:MF_00974 .
_:339477 up:source unirule:MF_00974 .
_:339478 up:source unirule:MF_00974 .
_:339479 up:source unirule:MF_00974 .
_:339480 up:source unirule:MF_00974 .
_:339481 up:source unirule:MF_00974 .
_:339482 up:source unirule:MF_00974 .
_:339483 up:source unirule:MF_00974 .
_:339484 up:source unirule:MF_00974 .
_:339485 up:source unirule:MF_00974 .
_:339486 up:source unirule:MF_00974 .
_:339487 up:source unirule:MF_00974 .
_:339488 up:source unirule:MF_00974 .
_:339489 up:source unirule:MF_00974 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0003899 ,
GO:0006269 ,
keyword:235 ,
keyword:238 ,
keyword:240 ,
keyword:548 ,
keyword:639 ,
keyword:804 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.101' ;
up:fullName 'DNA primase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dnaG' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Monomer. Interacts with DnaB.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DnaG primase family.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 ,
keyword:863 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Zinc_Finger_Annotation ;
rdfs:comment 'CHC2-type' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:339490 a rdf:Statement ;
up:attribution _:339470 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:339491 a rdf:Statement ;
up:attribution _:339471 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:339492 a rdf:Statement ;
up:attribution _:339472 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:339493 a rdf:Statement ;
up:attribution _:339473 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:339494 a rdf:Statement ;
up:attribution _:339474 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:339495 a rdf:Statement ;
up:attribution _:339475 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:339496 a rdf:Statement ;
up:attribution _:339476 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:339497 a rdf:Statement ;
up:attribution _:339477 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:339498 a rdf:Statement ;
up:attribution _:339478 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:240 .
_:339499 a rdf:Statement ;
up:attribution _:339479 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:339500 a rdf:Statement ;
up:attribution _:339480 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:639 .
_:339501 a rdf:Statement ;
up:attribution _:339481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:339502 a rdf:Statement ;
up:attribution _:339482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:339503 a rdf:Statement ;
up:attribution _:339483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003899 .
_:339504 a rdf:Statement ;
up:attribution _:339484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006269 .
_:339505 a rdf:Statement ;
up:attribution _:339485 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:339506 a rdf:Statement ;
up:attribution _:339486 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:339507 a rdf:Statement ;
up:attribution _:339487 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:863 .
_:339508 a rdf:Statement ;
up:attribution _:339488 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:339509 a rdf:Statement ;
up:source unirule:MF_00974 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:339510 a rdf:Statement ;
up:attribution _:339489 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00974
#Rule MF_00974 Created by:? on:2013-10-16 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00974 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00974a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00974a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00974a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00974a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00974a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP0ABS519 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ABS521 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ABS5MF_0097414 .
?templateMotifSequenceMatchRegionP0ABS519 faldo:begin ?templateMotifSequenceMatchBeginP0ABS520 .
?templateMotifSequenceMatchBeginP0ABS520 faldo:position ?templateMotifSequenceMatchBeginPositionP0ABS515 ;
faldo:reference isoform:P0ABS5-1 .
?templateMotifSequenceProfileAlignmentOperationP0ABS521 edam:has_input signature:MF_00974 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0097425 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ABS5MF_0097416 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0097424 .
?targetMotifMatchRegionMatchBeginMF_0097424 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0097417 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0097425 edam:has_input signature:MF_00974 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagzinc) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABS5MF_0097414, 1, (STRLEN(?templateMotifCigarP0ABS5MF_0097414) - STRLEN(REPLACE(?templateMotifCigarP0ABS5MF_0097414, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0ABS515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABS5MF_0097416, 1, (STRLEN(?targetMotifMatchCigarP0ABS5MF_0097416) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS5MF_0097416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABS5MF_0097416, 1, (STRLEN(?targetMotifMatchCigarP0ABS5MF_0097416) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS5MF_0097416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0097417) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ABS5MF_0097414, 1, (STRLEN(?templateMotifCigarP0ABS5MF_0097414) - STRLEN(REPLACE(?templateMotifCigarP0ABS5MF_0097414, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP0ABS515) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ABS5MF_0097416, 1, (STRLEN(?targetMotifMatchCigarP0ABS5MF_0097416) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS5MF_0097416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ABS5MF_0097416, 1, (STRLEN(?targetMotifMatchCigarP0ABS5MF_0097416) - STRLEN(REPLACE(?targetMotifMatchCigarP0ABS5MF_0097416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0097417) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)H[ARNDCQEGHILKMFPSTWYVBZJUOX]{17,18)C[ARNDCQEGHILKMFPSTWYVBZJUOX]{2,3)C', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00974a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag31) .
}
BIND(IF(BOUND(?tagzinc), ?caseWithTag31, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
