| http://purl.uniprot.org/unirules/MF_00996#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:347856 up:source unirule:MF_00996 .
_:347857 up:source unirule:MF_00996 .
_:347858 up:source unirule:MF_00996 .
_:347859 up:source unirule:MF_00996 .
_:347860 up:source unirule:MF_00996 .
_:347861 up:source unirule:MF_00996 .
_:347862 up:source unirule:MF_00996 .
_:347863 up:source unirule:MF_00996 .
_:347864 up:source unirule:MF_00996 .
_:347865 up:source unirule:MF_00996 .
_:347866 up:source unirule:MF_00996 .
_:347867 up:source unirule:MF_00996 .
_:347868 up:source unirule:MF_00996 .
_:347869 up:source unirule:MF_00996 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0009234 ,
GO:0016830 ,
keyword:456 ,
keyword:474 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.99.29' ;
up:fullName '1,4-dihydroxy-6-naphtoate synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Menaquinone biosynthetic enzyme MqnD' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mqnD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Quinol/quinone metabolism; menaquinone biosynthesis.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the MqnA/MqnD family. MqnD subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf ?molecule13 .
?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
_:347870 a rdf:Statement ;
up:attribution _:347856 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:347871 a rdf:Statement ;
up:attribution _:347857 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:347872 a rdf:Statement ;
up:attribution _:347858 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:347873 a rdf:Statement ;
up:attribution _:347859 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:347874 a rdf:Statement ;
up:attribution _:347860 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:347875 a rdf:Statement ;
up:attribution _:347861 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:347876 a rdf:Statement ;
up:attribution _:347862 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:347877 a rdf:Statement ;
up:attribution _:347863 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:347878 a rdf:Statement ;
up:attribution _:347864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:474 .
_:347879 a rdf:Statement ;
up:attribution _:347865 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016830 .
_:347880 a rdf:Statement ;
up:attribution _:347866 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009234 .
_:347881 a rdf:Statement ;
up:source unirule:MF_00996 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:347882 a rdf:Statement ;
up:attribution _:347867 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:347883 a rdf:Statement ;
up:source unirule:MF_00996 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:347884 a rdf:Statement ;
up:attribution _:347868 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:347885 a rdf:Statement ;
up:source unirule:MF_00996 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:347886 a rdf:Statement ;
up:attribution _:347869 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00996
#Rule MF_00996 Created by:? on:2014-02-17 Modified by:Elisabeth Coudert on:2024-05-02
VALUES ?supertaxon30 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00996 .
?thisOrganism rdfs:subClassOf+ ?supertaxon30 .
BIND(URI(CONCAT(STR(?this), '#MF_00996a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch35 faldo:location ?templateMotifSequenceMatchRegionQ5SI1236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SI1238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SI12MF_0099631 .
?templateMotifSequenceMatchRegionQ5SI1236 faldo:begin ?templateMotifSequenceMatchBeginQ5SI1237 .
?templateMotifSequenceMatchBeginQ5SI1237 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SI1232 ;
faldo:reference isoform:Q5SI12-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SI1238 edam:has_input signature:MF_00996 ;
rdf:type edam:operation_0300 .
?targetMotifMatch39 faldo:location ?targetMotifMatchRegionMatch40 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099642 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SI12MF_0099633 .
?targetMotifMatchRegionMatch40 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099641 .
?targetMotifMatchRegionMatchBeginMF_0099641 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099634 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099642 edam:has_input signature:MF_00996 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SI12MF_0099631, 1, (STRLEN(?templateMotifCigarQ5SI12MF_0099631) - STRLEN(REPLACE(?templateMotifCigarQ5SI12MF_0099631, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ5SI1232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099633, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099633) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099633, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099633) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step143), '}'), '')))), '[^-]', ''))) AS ?step244) .
BIND(((?step244 + ?targetMotifMatchRegionMatchBeginPositionMF_0099634) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SI12MF_0099631, 1, (STRLEN(?templateMotifCigarQ5SI12MF_0099631) - STRLEN(REPLACE(?templateMotifCigarQ5SI12MF_0099631, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionQ5SI1232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099633, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099633) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099633, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099633) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099633, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step145), '}'), '')))), '[^-]', ''))) AS ?step246) .
BIND(((?step246 + ?targetMotifMatchRegionMatchBeginPositionMF_0099634) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER (REGEX('K[LIV]S', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch52 faldo:location ?templateMotifSequenceMatchRegionQ5SI1253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SI1255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SI12MF_0099648 .
?templateMotifSequenceMatchRegionQ5SI1253 faldo:begin ?templateMotifSequenceMatchBeginQ5SI1254 .
?templateMotifSequenceMatchBeginQ5SI1254 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SI1249 ;
faldo:reference isoform:Q5SI12-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SI1255 edam:has_input signature:MF_00996 ;
rdf:type edam:operation_0300 .
?targetMotifMatch56 faldo:location ?targetMotifMatchRegionMatch57 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099659 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SI12MF_0099650 .
?targetMotifMatchRegionMatch57 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099658 .
?targetMotifMatchRegionMatchBeginMF_0099658 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099651 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099659 edam:has_input signature:MF_00996 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SI12MF_0099648, 1, (STRLEN(?templateMotifCigarQ5SI12MF_0099648) - STRLEN(REPLACE(?templateMotifCigarQ5SI12MF_0099648, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionQ5SI1249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099650, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099650) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099650, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099650) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0099651) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SI12MF_0099648, 1, (STRLEN(?templateMotifCigarQ5SI12MF_0099648) - STRLEN(REPLACE(?templateMotifCigarQ5SI12MF_0099648, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionQ5SI1249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099650, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099650) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099650, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099650) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099650, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step162), '}'), '')))), '[^-]', ''))) AS ?step263) .
BIND(((?step263 + ?targetMotifMatchRegionMatchBeginPositionMF_0099651) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER (REGEX('[TS]A', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionQ5SI1270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5SI1272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5SI12MF_0099665 .
?templateMotifSequenceMatchRegionQ5SI1270 faldo:begin ?templateMotifSequenceMatchBeginQ5SI1271 .
?templateMotifSequenceMatchBeginQ5SI1271 faldo:position ?templateMotifSequenceMatchBeginPositionQ5SI1266 ;
faldo:reference isoform:Q5SI12-1 .
?templateMotifSequenceProfileAlignmentOperationQ5SI1272 edam:has_input signature:MF_00996 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0099676 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5SI12MF_0099667 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0099675 .
?targetMotifMatchRegionMatchBeginMF_0099675 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0099668 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0099676 edam:has_input signature:MF_00996 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5SI12MF_0099665, 1, (STRLEN(?templateMotifCigarQ5SI12MF_0099665) - STRLEN(REPLACE(?templateMotifCigarQ5SI12MF_0099665, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionQ5SI1266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099667, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099667) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5SI12MF_0099667, 1, (STRLEN(?targetMotifMatchCigarQ5SI12MF_0099667) - STRLEN(REPLACE(?targetMotifMatchCigarQ5SI12MF_0099667, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0099668) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00996a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
}
"xsd:string |
