| http://purl.uniprot.org/unirules/MF_01005#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:351054 up:source unirule:MF_01005 .
_:351055 up:source unirule:MF_01005 .
_:351056 up:source unirule:MF_01005 .
_:351057 up:source unirule:MF_01005 .
_:351058 up:source unirule:MF_01005 .
_:351059 up:source unirule:MF_01005 .
_:351060 up:source unirule:MF_01005 .
_:351061 up:source unirule:MF_01005 .
_:351062 up:source unirule:MF_01005 .
_:351063 up:source unirule:MF_01005 .
_:351064 up:source unirule:MF_01005 .
_:351065 up:source unirule:MF_01005 .
_:351066 up:source unirule:MF_01005 .
_:351067 up:source unirule:MF_01005 .
_:351068 up:source unirule:MF_01005 .
_:351069 up:source unirule:MF_01005 .
_:351070 up:source unirule:MF_01005 .
_:351071 up:source unirule:MF_01005 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0005886 ,
GO:0015420 ,
GO:0015889 ,
keyword:1003 ,
keyword:1278 ,
keyword:472 ,
keyword:547 ,
keyword:67 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:ecName '7.6.2.8' ;
up:fullName 'Vitamin B12 import ATP-binding protein BtuD' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Vitamin B12-transporting ATPase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'btuD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'The complex is composed of two ATP-binding proteins (BtuD), two transmembrane proteins (BtuC) and a solute-binding protein (BtuF).' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ABC transporter superfamily. Vitamin B12 importer (TC 3.A.1.13.1) family.' .
?case8 up:classifiedWith keyword:997 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
_:351072 a rdf:Statement ;
up:attribution _:351054 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:351073 a rdf:Statement ;
up:attribution _:351055 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:351074 a rdf:Statement ;
up:attribution _:351056 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:351075 a rdf:Statement ;
up:attribution _:351057 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:351076 a rdf:Statement ;
up:attribution _:351058 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:351077 a rdf:Statement ;
up:attribution _:351059 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:351078 a rdf:Statement ;
up:attribution _:351060 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:351079 a rdf:Statement ;
up:attribution _:351061 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:351080 a rdf:Statement ;
up:attribution _:351062 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:351081 a rdf:Statement ;
up:attribution _:351063 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:351082 a rdf:Statement ;
up:attribution _:351064 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:351083 a rdf:Statement ;
up:attribution _:351065 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1278 .
_:351084 a rdf:Statement ;
up:attribution _:351066 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:351085 a rdf:Statement ;
up:attribution _:351067 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015420 .
_:351086 a rdf:Statement ;
up:attribution _:351068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015889 .
_:351087 a rdf:Statement ;
up:attribution _:351069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:351088 a rdf:Statement ;
up:attribution _:351070 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:351089 a rdf:Statement ;
up:source unirule:MF_01005 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:351090 a rdf:Statement ;
up:attribution _:351071 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01005
#Rule MF_01005 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon17 {taxon:91347 taxon:641}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01005 .
?thisOrganism rdfs:subClassOf+ ?supertaxon17 .
BIND(URI(CONCAT(STR(?this), '#MF_01005a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01005a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01005a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01005a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01005a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01005a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch22 faldo:location ?templateMotifSequenceMatchRegionP0661123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0661125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06611MF_0100518 .
?templateMotifSequenceMatchRegionP0661123 faldo:begin ?templateMotifSequenceMatchBeginP0661124 .
?templateMotifSequenceMatchBeginP0661124 faldo:position ?templateMotifSequenceMatchBeginPositionP0661119 ;
faldo:reference isoform:P06611-1 .
?templateMotifSequenceProfileAlignmentOperationP0661125 edam:has_input signature:MF_01005 ;
rdf:type edam:operation_0300 .
?targetMotifMatch26 faldo:location ?targetMotifMatchRegionMatch27 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0100529 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06611MF_0100520 .
?targetMotifMatchRegionMatch27 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0100528 .
?targetMotifMatchRegionMatchBeginMF_0100528 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0100521 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0100529 edam:has_input signature:MF_01005 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06611MF_0100518, 1, (STRLEN(?templateMotifCigarP06611MF_0100518) - STRLEN(REPLACE(?templateMotifCigarP06611MF_0100518, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP0661119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06611MF_0100520, 1, (STRLEN(?targetMotifMatchCigarP06611MF_0100520) - STRLEN(REPLACE(?targetMotifMatchCigarP06611MF_0100520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06611MF_0100520, 1, (STRLEN(?targetMotifMatchCigarP06611MF_0100520) - STRLEN(REPLACE(?targetMotifMatchCigarP06611MF_0100520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0100521) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06611MF_0100518, 1, (STRLEN(?templateMotifCigarP06611MF_0100518) - STRLEN(REPLACE(?templateMotifCigarP06611MF_0100518, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionP0661119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06611MF_0100520, 1, (STRLEN(?targetMotifMatchCigarP06611MF_0100520) - STRLEN(REPLACE(?targetMotifMatchCigarP06611MF_0100520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06611MF_0100520, 1, (STRLEN(?targetMotifMatchCigarP06611MF_0100520) - STRLEN(REPLACE(?targetMotifMatchCigarP06611MF_0100520, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0100521) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('GPNG[ASC]GKS', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01005a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p35 .
?p35 skos:narrower .
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p36 .
?p36 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p37 .
?p37 skos:narrower .
}
}
BIND(?this AS ?case9) .
}
}
"xsd:string |
