| http://purl.uniprot.org/unirules/MF_01034#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:362685 up:source unirule:MF_01034 .
_:362686 up:source unirule:MF_01034 .
_:362687 up:source unirule:MF_01034 .
_:362688 up:source unirule:MF_01034 .
_:362689 up:source unirule:MF_01034 .
_:362690 up:source unirule:MF_01034 .
_:362691 up:source unirule:MF_01034 .
_:362692 up:source unirule:MF_01034 .
_:362693 up:source unirule:MF_01034 .
_:362694 up:source unirule:MF_01034 .
_:362695 up:source unirule:MF_01034 .
_:362696 up:source unirule:MF_01034 .
_:362697 up:source unirule:MF_01034 .
_:362698 up:source unirule:MF_01034 .
_:362699 up:source unirule:MF_01034 .
_:362700 up:source unirule:MF_01034 .
_:362701 up:source unirule:MF_01034 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005886 ,
GO:0009002 ,
keyword:1003 ,
keyword:1133 ,
keyword:121 ,
keyword:378 ,
keyword:472 ,
keyword:645 ,
keyword:812 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.16.4' ;
up:fullName 'Putative D-alanyl-D-alanine carboxypeptidase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'DD-carboxypeptidase' ;
up:shortName 'DD-CPase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'yfeW' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase S12 family. YfeW subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Signal-anchor' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
_:362702 a rdf:Statement ;
up:attribution _:362685 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:362703 a rdf:Statement ;
up:attribution _:362686 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:362704 a rdf:Statement ;
up:attribution _:362687 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:362705 a rdf:Statement ;
up:attribution _:362688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:362706 a rdf:Statement ;
up:attribution _:362689 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:362707 a rdf:Statement ;
up:attribution _:362690 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:362708 a rdf:Statement ;
up:attribution _:362691 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:121 .
_:362709 a rdf:Statement ;
up:attribution _:362692 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:362710 a rdf:Statement ;
up:attribution _:362693 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:362711 a rdf:Statement ;
up:attribution _:362694 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:362712 a rdf:Statement ;
up:attribution _:362695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:362713 a rdf:Statement ;
up:attribution _:362696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:362714 a rdf:Statement ;
up:attribution _:362697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:362715 a rdf:Statement ;
up:attribution _:362698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:362716 a rdf:Statement ;
up:attribution _:362699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009002 .
_:362717 a rdf:Statement ;
up:attribution _:362700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:362718 a rdf:Statement ;
up:source unirule:MF_01034 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:362719 a rdf:Statement ;
up:attribution _:362701 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01034
#Rule MF_01034 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01034 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01034a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01034a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01034a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01034a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01034a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP7761919 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7761921 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77619MF_0103414 .
?templateMotifSequenceMatchRegionP7761919 faldo:begin ?templateMotifSequenceMatchBeginP7761920 .
?templateMotifSequenceMatchBeginP7761920 faldo:position ?templateMotifSequenceMatchBeginPositionP7761915 ;
faldo:reference isoform:P77619-1 .
?templateMotifSequenceProfileAlignmentOperationP7761921 edam:has_input signature:MF_01034 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0103425 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77619MF_0103416 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0103424 .
?targetMotifMatchRegionMatchBeginMF_0103424 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0103417 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0103425 edam:has_input signature:MF_01034 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77619MF_0103414, 1, (STRLEN(?templateMotifCigarP77619MF_0103414) - STRLEN(REPLACE(?templateMotifCigarP77619MF_0103414, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP7761915) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77619MF_0103416, 1, (STRLEN(?targetMotifMatchCigarP77619MF_0103416) - STRLEN(REPLACE(?targetMotifMatchCigarP77619MF_0103416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77619MF_0103416, 1, (STRLEN(?targetMotifMatchCigarP77619MF_0103416) - STRLEN(REPLACE(?targetMotifMatchCigarP77619MF_0103416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0103417) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77619MF_0103414, 1, (STRLEN(?templateMotifCigarP77619MF_0103414) - STRLEN(REPLACE(?templateMotifCigarP77619MF_0103414, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP7761915) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77619MF_0103416, 1, (STRLEN(?targetMotifMatchCigarP77619MF_0103416) - STRLEN(REPLACE(?targetMotifMatchCigarP77619MF_0103416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77619MF_0103416, 1, (STRLEN(?targetMotifMatchCigarP77619MF_0103416) - STRLEN(REPLACE(?targetMotifMatchCigarP77619MF_0103416, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0103417) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn12) && BOUND(?thisPositionOn13))) .
BIND(URI(CONCAT(STR(?this), '#MF_01034a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
}
"xsd:string |
