| http://purl.uniprot.org/unirules/MF_01036#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:363658 up:source unirule:MF_01036 .
_:363659 up:source unirule:MF_01036 .
_:363660 up:source unirule:MF_01036 .
_:363661 up:source unirule:MF_01036 .
_:363662 up:source unirule:MF_01036 .
_:363663 up:source unirule:MF_01036 .
_:363664 up:source unirule:MF_01036 .
_:363665 up:source unirule:MF_01036 .
_:363666 up:source unirule:MF_01036 .
_:363667 up:source unirule:MF_01036 .
_:363668 up:source unirule:MF_01036 .
_:363669 up:source unirule:MF_01036 .
_:363670 up:source unirule:MF_01036 .
_:363671 up:source unirule:MF_01036 .
_:363672 up:source unirule:MF_01036 .
_:363673 up:source unirule:MF_01036 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005737 ,
GO:0006402 ,
GO:0008859 ,
keyword:269 ,
keyword:378 ,
keyword:540 ,
keyword:694 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.13.1' ;
up:fullName 'Exoribonuclease 2' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Exoribonuclease II' ;
up:shortName 'RNase II' ,
'Ribonuclease II' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rnb' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RNR ribonuclease family. RNase II subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'S1 motif' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:363674 a rdf:Statement ;
up:attribution _:363658 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:363675 a rdf:Statement ;
up:attribution _:363659 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:363676 a rdf:Statement ;
up:attribution _:363660 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:363677 a rdf:Statement ;
up:attribution _:363661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:363678 a rdf:Statement ;
up:attribution _:363662 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:363679 a rdf:Statement ;
up:attribution _:363663 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:363680 a rdf:Statement ;
up:attribution _:363664 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:363681 a rdf:Statement ;
up:attribution _:363665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:363682 a rdf:Statement ;
up:attribution _:363666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:363683 a rdf:Statement ;
up:attribution _:363667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:363684 a rdf:Statement ;
up:attribution _:363668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:363685 a rdf:Statement ;
up:attribution _:363669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:363686 a rdf:Statement ;
up:attribution _:363670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008859 .
_:363687 a rdf:Statement ;
up:attribution _:363671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006402 .
_:363688 a rdf:Statement ;
up:attribution _:363672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:363689 a rdf:Statement ;
up:source unirule:MF_01036 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:363690 a rdf:Statement ;
up:attribution _:363673 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01036
#Rule MF_01036 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01036 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01036a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01036a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01036a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01036a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01036a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01036a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP4444020 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4444022 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP44440MF_0103615 .
?templateMotifSequenceMatchRegionP4444020 faldo:begin ?templateMotifSequenceMatchBeginP4444021 .
?templateMotifSequenceMatchBeginP4444021 faldo:position ?templateMotifSequenceMatchBeginPositionP4444016 ;
faldo:reference isoform:P44440-1 .
?templateMotifSequenceProfileAlignmentOperationP4444022 edam:has_input signature:MF_01036 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0103626 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP44440MF_0103617 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0103625 .
?targetMotifMatchRegionMatchBeginMF_0103625 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0103618 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0103626 edam:has_input signature:MF_01036 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44440MF_0103615, 1, (STRLEN(?templateMotifCigarP44440MF_0103615) - STRLEN(REPLACE(?templateMotifCigarP44440MF_0103615, CONCAT('^(?:-*[^-]){', STR(((576 - ?templateMotifSequenceMatchBeginPositionP4444016) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44440MF_0103617, 1, (STRLEN(?targetMotifMatchCigarP44440MF_0103617) - STRLEN(REPLACE(?targetMotifMatchCigarP44440MF_0103617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44440MF_0103617, 1, (STRLEN(?targetMotifMatchCigarP44440MF_0103617) - STRLEN(REPLACE(?targetMotifMatchCigarP44440MF_0103617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0103618) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP44440MF_0103615, 1, (STRLEN(?templateMotifCigarP44440MF_0103615) - STRLEN(REPLACE(?templateMotifCigarP44440MF_0103615, CONCAT('^(?:-*[^-]){', STR(((658 - ?templateMotifSequenceMatchBeginPositionP4444016) + 1)), '}'), '')))), '[a-z]', '')) AS ?step129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP44440MF_0103617, 1, (STRLEN(?targetMotifMatchCigarP44440MF_0103617) - STRLEN(REPLACE(?targetMotifMatchCigarP44440MF_0103617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP44440MF_0103617, 1, (STRLEN(?targetMotifMatchCigarP44440MF_0103617) - STRLEN(REPLACE(?targetMotifMatchCigarP44440MF_0103617, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step129), '}'), '')))), '[^-]', ''))) AS ?step230) .
BIND(((?step230 + ?targetMotifMatchRegionMatchBeginPositionMF_0103618) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_01036a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
