| http://purl.uniprot.org/unirules/MF_01153#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:402984 up:source unirule:MF_01153 .
_:402985 up:source unirule:MF_01153 .
_:402986 up:source unirule:MF_01153 .
_:402987 up:source unirule:MF_01153 .
_:402988 up:source unirule:MF_01153 .
_:402989 up:source unirule:MF_01153 .
_:402990 up:source unirule:MF_01153 .
_:402991 up:source unirule:MF_01153 .
_:402992 up:source unirule:MF_01153 .
_:402993 up:source unirule:MF_01153 .
_:402994 up:source unirule:MF_01153 .
_:402995 up:source unirule:MF_01153 .
_:402996 up:source unirule:MF_01153 .
_:402997 up:source unirule:MF_01153 .
_:402998 up:source unirule:MF_01153 .
_:402999 up:source unirule:MF_01153 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005886 ,
keyword:1003 ,
keyword:1133 ,
keyword:143 ,
keyword:472 ,
keyword:812 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Co-chaperone protein DjlA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'djlA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Domain_Annotation ;
rdfs:comment 'The transmembrane domain is a dimerization domain.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:403000 a rdf:Statement ;
up:attribution _:402984 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:403001 a rdf:Statement ;
up:attribution _:402985 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:403002 a rdf:Statement ;
up:attribution _:402986 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:403003 a rdf:Statement ;
up:attribution _:402987 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:403004 a rdf:Statement ;
up:attribution _:402988 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:403005 a rdf:Statement ;
up:attribution _:402989 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:403006 a rdf:Statement ;
up:attribution _:402990 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:143 .
_:403007 a rdf:Statement ;
up:attribution _:402991 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:403008 a rdf:Statement ;
up:attribution _:402992 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:403009 a rdf:Statement ;
up:attribution _:402993 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:403010 a rdf:Statement ;
up:attribution _:402994 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:403011 a rdf:Statement ;
up:attribution _:402995 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:403012 a rdf:Statement ;
up:attribution _:402996 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:403013 a rdf:Statement ;
up:source unirule:MF_01153 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:403014 a rdf:Statement ;
up:attribution _:402997 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:403015 a rdf:Statement ;
up:source unirule:MF_01153 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:403016 a rdf:Statement ;
up:attribution _:402998 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:403017 a rdf:Statement ;
up:source unirule:MF_01153 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:403018 a rdf:Statement ;
up:attribution _:402999 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01153
#Rule MF_01153 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01153 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01153a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01153a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01153a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01153a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01153a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP3168030 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3168032 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31680MF_0115325 .
?templateMotifSequenceMatchRegionP3168030 faldo:begin ?templateMotifSequenceMatchBeginP3168031 .
?templateMotifSequenceMatchBeginP3168031 faldo:position ?templateMotifSequenceMatchBeginPositionP3168026 ;
faldo:reference isoform:P31680-1 .
?templateMotifSequenceProfileAlignmentOperationP3168032 edam:has_input signature:MF_01153 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0115336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31680MF_0115327 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0115335 .
?targetMotifMatchRegionMatchBeginMF_0115335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0115328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0115336 edam:has_input signature:MF_01153 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31680MF_0115325, 1, (STRLEN(?templateMotifCigarP31680MF_0115325) - STRLEN(REPLACE(?templateMotifCigarP31680MF_0115325, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP3168026) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31680MF_0115327, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115327) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31680MF_0115327, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115327) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0115328) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_01153a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP3168045 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3168047 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31680MF_0115340 .
?templateMotifSequenceMatchRegionP3168045 faldo:begin ?templateMotifSequenceMatchBeginP3168046 .
?templateMotifSequenceMatchBeginP3168046 faldo:position ?templateMotifSequenceMatchBeginPositionP3168041 ;
faldo:reference isoform:P31680-1 .
?templateMotifSequenceProfileAlignmentOperationP3168047 edam:has_input signature:MF_01153 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0115351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31680MF_0115342 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0115350 .
?targetMotifMatchRegionMatchBeginMF_0115350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0115343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0115351 edam:has_input signature:MF_01153 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31680MF_0115340, 1, (STRLEN(?templateMotifCigarP31680MF_0115340) - STRLEN(REPLACE(?templateMotifCigarP31680MF_0115340, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP3168041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31680MF_0115342, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115342) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31680MF_0115342, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115342) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0115343) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31680MF_0115340, 1, (STRLEN(?templateMotifCigarP31680MF_0115340) - STRLEN(REPLACE(?templateMotifCigarP31680MF_0115340, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP3168041) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31680MF_0115342, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115342) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31680MF_0115342, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115342) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0115343) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01153a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP3168062 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3168064 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31680MF_0115357 .
?templateMotifSequenceMatchRegionP3168062 faldo:begin ?templateMotifSequenceMatchBeginP3168063 .
?templateMotifSequenceMatchBeginP3168063 faldo:position ?templateMotifSequenceMatchBeginPositionP3168058 ;
faldo:reference isoform:P31680-1 .
?templateMotifSequenceProfileAlignmentOperationP3168064 edam:has_input signature:MF_01153 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0115368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31680MF_0115359 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0115367 .
?targetMotifMatchRegionMatchBeginMF_0115367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0115360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0115368 edam:has_input signature:MF_01153 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31680MF_0115357, 1, (STRLEN(?templateMotifCigarP31680MF_0115357) - STRLEN(REPLACE(?templateMotifCigarP31680MF_0115357, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP3168058) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31680MF_0115359, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115359) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31680MF_0115359, 1, (STRLEN(?targetMotifMatchCigarP31680MF_0115359) - STRLEN(REPLACE(?targetMotifMatchCigarP31680MF_0115359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0115360) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_01153a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
