| http://purl.uniprot.org/unirules/MF_01173#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:410499 up:source unirule:MF_01173 .
_:410500 up:source unirule:MF_01173 .
_:410501 up:source unirule:MF_01173 .
_:410502 up:source unirule:MF_01173 .
_:410503 up:source unirule:MF_01173 .
_:410504 up:source unirule:MF_01173 .
_:410505 up:source unirule:MF_01173 .
_:410506 up:source unirule:MF_01173 .
_:410507 up:source unirule:MF_01173 .
_:410508 up:source unirule:MF_01173 .
_:410509 up:source unirule:MF_01173 .
_:410510 up:source unirule:MF_01173 .
_:410511 up:source unirule:MF_01173 .
_:410512 up:source unirule:MF_01173 .
_:410513 up:source unirule:MF_01173 .
_:410514 up:source unirule:MF_01173 .
_:410515 up:source unirule:MF_01173 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008483 ,
GO:0019544 ,
GO:0019545 ,
GO:0030170 ,
keyword:32 ,
keyword:56 ,
keyword:663 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.6.1.81' ;
up:fullName 'Succinylornithine transaminase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Succinylornithine aminotransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:altLabel 'argM' ;
skos:prefLabel 'astC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transamination of N(2)-succinylornithine and alpha-ketoglutarate into N(2)-succinylglutamate semialdehyde and glutamate. Can also act as an acetylornithine aminotransferase.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-arginine degradation via AST pathway; L-glutamate and succinate from L-arginine: step 3/5.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. AstC subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
_:410516 a rdf:Statement ;
up:attribution _:410499 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:410517 a rdf:Statement ;
up:attribution _:410500 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:410518 a rdf:Statement ;
up:attribution _:410501 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:410519 a rdf:Statement ;
up:attribution _:410502 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:410520 a rdf:Statement ;
up:attribution _:410503 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:410521 a rdf:Statement ;
up:attribution _:410504 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:410522 a rdf:Statement ;
up:attribution _:410505 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:410523 a rdf:Statement ;
up:attribution _:410506 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:410524 a rdf:Statement ;
up:attribution _:410507 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:32 .
_:410525 a rdf:Statement ;
up:attribution _:410508 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:56 .
_:410526 a rdf:Statement ;
up:attribution _:410509 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:410527 a rdf:Statement ;
up:attribution _:410510 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:410528 a rdf:Statement ;
up:attribution _:410511 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:410529 a rdf:Statement ;
up:attribution _:410512 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008483 .
_:410530 a rdf:Statement ;
up:attribution _:410513 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019544 .
_:410531 a rdf:Statement ;
up:attribution _:410514 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019545 .
_:410532 a rdf:Statement ;
up:source unirule:MF_01173 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:410533 a rdf:Statement ;
up:attribution _:410515 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01173
#Rule MF_01173 Created by:? on:2006-11-09 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01173 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01173a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01173a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01173a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01173a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01173a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01173a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01173a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch19 faldo:location ?templateMotifSequenceMatchRegionP7758120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7758122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77581MF_0117315 .
?templateMotifSequenceMatchRegionP7758120 faldo:begin ?templateMotifSequenceMatchBeginP7758121 .
?templateMotifSequenceMatchBeginP7758121 faldo:position ?templateMotifSequenceMatchBeginPositionP7758116 ;
faldo:reference isoform:P77581-1 .
?templateMotifSequenceProfileAlignmentOperationP7758122 edam:has_input signature:MF_01173 ;
rdf:type edam:operation_0300 .
?targetMotifMatch23 faldo:location ?targetMotifMatchRegionMatch24 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77581MF_0117317 .
?targetMotifMatchRegionMatch24 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117325 .
?targetMotifMatchRegionMatchBeginMF_0117325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117326 edam:has_input signature:MF_01173 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77581MF_0117315, 1, (STRLEN(?templateMotifCigarP77581MF_0117315) - STRLEN(REPLACE(?templateMotifCigarP77581MF_0117315, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP7758116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77581MF_0117317, 1, (STRLEN(?targetMotifMatchCigarP77581MF_0117317) - STRLEN(REPLACE(?targetMotifMatchCigarP77581MF_0117317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77581MF_0117317, 1, (STRLEN(?targetMotifMatchCigarP77581MF_0117317) - STRLEN(REPLACE(?targetMotifMatchCigarP77581MF_0117317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step127), '}'), '')))), '[^-]', ''))) AS ?step228) .
BIND(((?step228 + ?targetMotifMatchRegionMatchBeginPositionMF_0117318) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01173a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
}
"xsd:string |
