| http://purl.uniprot.org/unirules/MF_01174#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:410812 up:source unirule:MF_01174 .
_:410813 up:source unirule:MF_01174 .
_:410814 up:source unirule:MF_01174 .
_:410815 up:source unirule:MF_01174 .
_:410816 up:source unirule:MF_01174 .
_:410817 up:source unirule:MF_01174 .
_:410818 up:source unirule:MF_01174 .
_:410819 up:source unirule:MF_01174 .
_:410820 up:source unirule:MF_01174 .
_:410821 up:source unirule:MF_01174 .
_:410822 up:source unirule:MF_01174 .
_:410823 up:source unirule:MF_01174 .
_:410824 up:source unirule:MF_01174 .
_:410825 up:source unirule:MF_01174 .
_:410826 up:source unirule:MF_01174 .
_:410827 up:source unirule:MF_01174 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0016491 ,
GO:0019544 ,
GO:0019545 ,
keyword:520 ,
keyword:560 ,
keyword:56 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.1.71' ;
up:fullName 'N-succinylglutamate 5-semialdehyde dehydrogenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Succinylglutamic semialdehyde dehydrogenase' ;
up:shortName 'SGSD' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'astD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-arginine degradation via AST pathway; L-glutamate and succinate from L-arginine: step 4/5.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aldehyde dehydrogenase family. AstD subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:57540 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Active_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Active_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
_:410828 a rdf:Statement ;
up:attribution _:410812 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:410829 a rdf:Statement ;
up:attribution _:410813 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:410830 a rdf:Statement ;
up:attribution _:410814 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:410831 a rdf:Statement ;
up:attribution _:410815 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:410832 a rdf:Statement ;
up:attribution _:410816 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:410833 a rdf:Statement ;
up:attribution _:410817 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:410834 a rdf:Statement ;
up:attribution _:410818 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:410835 a rdf:Statement ;
up:attribution _:410819 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:56 .
_:410836 a rdf:Statement ;
up:attribution _:410820 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:410837 a rdf:Statement ;
up:attribution _:410821 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:410838 a rdf:Statement ;
up:attribution _:410822 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016491 .
_:410839 a rdf:Statement ;
up:attribution _:410823 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019544 .
_:410840 a rdf:Statement ;
up:attribution _:410824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019545 .
_:410841 a rdf:Statement ;
up:source unirule:MF_01174 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:410842 a rdf:Statement ;
up:attribution _:410825 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:410843 a rdf:Statement ;
up:source unirule:MF_01174 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:410844 a rdf:Statement ;
up:attribution _:410826 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:410845 a rdf:Statement ;
up:source unirule:MF_01174 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:410846 a rdf:Statement ;
up:attribution _:410827 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01174
#Rule MF_01174 Created by:? on:2006-11-03 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01174 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01174a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch31 faldo:location ?templateMotifSequenceMatchRegionP7621732 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7621734 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76217MF_0117427 .
?templateMotifSequenceMatchRegionP7621732 faldo:begin ?templateMotifSequenceMatchBeginP7621733 .
?templateMotifSequenceMatchBeginP7621733 faldo:position ?templateMotifSequenceMatchBeginPositionP7621728 ;
faldo:reference isoform:P76217-1 .
?templateMotifSequenceProfileAlignmentOperationP7621734 edam:has_input signature:MF_01174 ;
rdf:type edam:operation_0300 .
?targetMotifMatch35 faldo:location ?targetMotifMatchRegionMatch36 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117438 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76217MF_0117429 .
?targetMotifMatchRegionMatch36 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117437 .
?targetMotifMatchRegionMatchBeginMF_0117437 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117430 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117438 edam:has_input signature:MF_01174 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76217MF_0117427, 1, (STRLEN(?templateMotifCigarP76217MF_0117427) - STRLEN(REPLACE(?templateMotifCigarP76217MF_0117427, CONCAT('^(?:-*[^-]){', STR(((220 - ?templateMotifSequenceMatchBeginPositionP7621728) + 1)), '}'), '')))), '[a-z]', '')) AS ?step139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76217MF_0117429, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117429) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76217MF_0117429, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117429) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step139), '}'), '')))), '[^-]', ''))) AS ?step240) .
BIND(((?step240 + ?targetMotifMatchRegionMatchBeginPositionMF_0117430) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76217MF_0117427, 1, (STRLEN(?templateMotifCigarP76217MF_0117427) - STRLEN(REPLACE(?templateMotifCigarP76217MF_0117427, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP7621728) + 1)), '}'), '')))), '[a-z]', '')) AS ?step141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76217MF_0117429, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117429) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76217MF_0117429, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117429) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117429, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step141), '}'), '')))), '[^-]', ''))) AS ?step242) .
BIND(((?step242 + ?targetMotifMatchRegionMatchBeginPositionMF_0117430) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionP7621749 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7621751 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76217MF_0117444 .
?templateMotifSequenceMatchRegionP7621749 faldo:begin ?templateMotifSequenceMatchBeginP7621750 .
?templateMotifSequenceMatchBeginP7621750 faldo:position ?templateMotifSequenceMatchBeginPositionP7621745 ;
faldo:reference isoform:P76217-1 .
?templateMotifSequenceProfileAlignmentOperationP7621751 edam:has_input signature:MF_01174 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117455 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76217MF_0117446 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117454 .
?targetMotifMatchRegionMatchBeginMF_0117454 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117447 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117455 edam:has_input signature:MF_01174 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76217MF_0117444, 1, (STRLEN(?templateMotifCigarP76217MF_0117444) - STRLEN(REPLACE(?templateMotifCigarP76217MF_0117444, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP7621745) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76217MF_0117446, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117446) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76217MF_0117446, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117446) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117446, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0117447) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionP7621764 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP7621766 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP76217MF_0117459 .
?templateMotifSequenceMatchRegionP7621764 faldo:begin ?templateMotifSequenceMatchBeginP7621765 .
?templateMotifSequenceMatchBeginP7621765 faldo:position ?templateMotifSequenceMatchBeginPositionP7621760 ;
faldo:reference isoform:P76217-1 .
?templateMotifSequenceProfileAlignmentOperationP7621766 edam:has_input signature:MF_01174 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0117470 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP76217MF_0117461 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0117469 .
?targetMotifMatchRegionMatchBeginMF_0117469 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0117462 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0117470 edam:has_input signature:MF_01174 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP76217MF_0117459, 1, (STRLEN(?templateMotifCigarP76217MF_0117459) - STRLEN(REPLACE(?templateMotifCigarP76217MF_0117459, CONCAT('^(?:-*[^-]){', STR(((277 - ?templateMotifSequenceMatchBeginPositionP7621760) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP76217MF_0117461, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117461) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP76217MF_0117461, 1, (STRLEN(?targetMotifMatchCigarP76217MF_0117461) - STRLEN(REPLACE(?targetMotifMatchCigarP76217MF_0117461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0117462) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01174a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
}
"xsd:string |
