| http://purl.uniprot.org/unirules/MF_01180#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:412692 up:source unirule:MF_01180 .
_:412693 up:source unirule:MF_01180 .
_:412694 up:source unirule:MF_01180 .
_:412695 up:source unirule:MF_01180 .
_:412696 up:source unirule:MF_01180 .
_:412697 up:source unirule:MF_01180 .
_:412698 up:source unirule:MF_01180 .
_:412699 up:source unirule:MF_01180 .
_:412700 up:source unirule:MF_01180 .
_:412701 up:source unirule:MF_01180 .
_:412702 up:source unirule:MF_01180 .
_:412703 up:source unirule:MF_01180 .
_:412704 up:source unirule:MF_01180 .
_:412705 up:source unirule:MF_01180 .
_:412706 up:source unirule:MF_01180 .
_:412707 up:source unirule:MF_01180 .
_:412708 up:source unirule:MF_01180 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0006457 ,
GO:1902209 ,
keyword:1005 ,
keyword:143 ,
keyword:678 ,
keyword:804 ,
keyword:805 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Flagellar protein FliT' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'fliT' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Dual-function protein that regulates the transcription of class 2 flagellar operons and that also acts as an export chaperone for the filament-capping protein FliD. As a transcriptional regulator, acts as an anti-FlhDC factor; it directly binds FlhC, thus inhibiting the binding of the FlhC/FlhD complex to class 2 promoters, resulting in decreased expression of class 2 flagellar operons. As a chaperone, effects FliD transition to the membrane by preventing its premature polymerization, and by directing it to the export apparatus.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Interacts with FliD and FlhC.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the FliT family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Required for homodimerization' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'FliD binding' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
_:412709 a rdf:Statement ;
up:attribution _:412692 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:412710 a rdf:Statement ;
up:attribution _:412693 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:412711 a rdf:Statement ;
up:attribution _:412694 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:412712 a rdf:Statement ;
up:attribution _:412695 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:412713 a rdf:Statement ;
up:attribution _:412696 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:412714 a rdf:Statement ;
up:attribution _:412697 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:412715 a rdf:Statement ;
up:attribution _:412698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1005 .
_:412716 a rdf:Statement ;
up:attribution _:412699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:143 .
_:412717 a rdf:Statement ;
up:attribution _:412700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:412718 a rdf:Statement ;
up:attribution _:412701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:678 .
_:412719 a rdf:Statement ;
up:attribution _:412702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:412720 a rdf:Statement ;
up:attribution _:412703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:412721 a rdf:Statement ;
up:attribution _:412704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:412722 a rdf:Statement ;
up:attribution _:412705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:1902209 .
_:412723 a rdf:Statement ;
up:attribution _:412706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006457 .
_:412724 a rdf:Statement ;
up:source unirule:MF_01180 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:412725 a rdf:Statement ;
up:attribution _:412707 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:412726 a rdf:Statement ;
up:source unirule:MF_01180 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:412727 a rdf:Statement ;
up:attribution _:412708 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01180
#Rule MF_01180 Created by:? on:2008-10-15 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01180 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01180a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01180a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01180a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01180a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01180a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch23 faldo:location ?templateMotifSequenceMatchRegionP0A1N224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A1N226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A1N2MF_0118019 .
?templateMotifSequenceMatchRegionP0A1N224 faldo:begin ?templateMotifSequenceMatchBeginP0A1N225 .
?templateMotifSequenceMatchBeginP0A1N225 faldo:position ?templateMotifSequenceMatchBeginPositionP0A1N220 ;
faldo:reference isoform:P0A1N2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A1N226 edam:has_input signature:MF_01180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch27 faldo:location ?targetMotifMatchRegionMatch28 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0118030 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A1N2MF_0118021 .
?targetMotifMatchRegionMatch28 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0118029 .
?targetMotifMatchRegionMatchBeginMF_0118029 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0118022 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0118030 edam:has_input signature:MF_01180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A1N2MF_0118019, 1, (STRLEN(?templateMotifCigarP0A1N2MF_0118019) - STRLEN(REPLACE(?templateMotifCigarP0A1N2MF_0118019, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP0A1N220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118021, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118021) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118021, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118021, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118021) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118021, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step131), '}'), '')))), '[^-]', ''))) AS ?step232) .
BIND(((?step232 + ?targetMotifMatchRegionMatchBeginPositionMF_0118022) - 1) AS ?thisPositionOn11) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A1N2MF_0118019, 1, (STRLEN(?templateMotifCigarP0A1N2MF_0118019) - STRLEN(REPLACE(?templateMotifCigarP0A1N2MF_0118019, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionP0A1N220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118021, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118021) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118021, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118021, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118021) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118021, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step133), '}'), '')))), '[^-]', ''))) AS ?step234) .
BIND(((?step234 + ?targetMotifMatchRegionMatchBeginPositionMF_0118022) - 1) AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((BOUND(?thisPositionOn11) && BOUND(?thisPositionOn12))) .
BIND(URI(CONCAT(STR(?this), '#MF_01180a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP0A1N241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A1N243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A1N2MF_0118036 .
?templateMotifSequenceMatchRegionP0A1N241 faldo:begin ?templateMotifSequenceMatchBeginP0A1N242 .
?templateMotifSequenceMatchBeginP0A1N242 faldo:position ?templateMotifSequenceMatchBeginPositionP0A1N237 ;
faldo:reference isoform:P0A1N2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A1N243 edam:has_input signature:MF_01180 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0118047 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A1N2MF_0118038 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0118046 .
?targetMotifMatchRegionMatchBeginMF_0118046 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0118039 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0118047 edam:has_input signature:MF_01180 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A1N2MF_0118036, 1, (STRLEN(?templateMotifCigarP0A1N2MF_0118036) - STRLEN(REPLACE(?templateMotifCigarP0A1N2MF_0118036, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP0A1N237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118038, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118038) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118038, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118038) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0118039) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A1N2MF_0118036, 1, (STRLEN(?templateMotifCigarP0A1N2MF_0118036) - STRLEN(REPLACE(?templateMotifCigarP0A1N2MF_0118036, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP0A1N237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118038, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118038) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A1N2MF_0118038, 1, (STRLEN(?targetMotifMatchCigarP0A1N2MF_0118038) - STRLEN(REPLACE(?targetMotifMatchCigarP0A1N2MF_0118038, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0118039) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_01180a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
}
"xsd:string |
