| http://purl.uniprot.org/unirules/MF_01219#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:429465 up:source unirule:MF_01219 .
_:429466 up:fullName 'Pyrimidine operon regulatory protein' ;
rdf:type up:Structured_Name .
_:429467 up:source unirule:MF_01219 .
_:429468 up:ecName '2.4.2.9' ;
up:fullName 'Uracil phosphoribosyltransferase' ;
up:shortName 'UPRTase' ;
rdf:type up:Structured_Name .
_:429469 up:source unirule:MF_01219 .
_:429470 up:source unirule:MF_01219 .
_:429471 up:source unirule:MF_01219 .
_:429472 up:source unirule:MF_01219 .
_:429473 up:source unirule:MF_01219 .
_:429474 up:source unirule:MF_01219 .
_:429475 up:source unirule:MF_01219 .
_:429476 up:source unirule:MF_01219 .
_:429477 up:source unirule:MF_01219 .
_:429478 up:source unirule:MF_01219 .
_:429479 up:source unirule:MF_01219 .
_:429480 up:source unirule:MF_01219 .
_:429481 up:source unirule:MF_01219 .
_:429482 up:source unirule:MF_01219 .
_:429483 up:source unirule:MF_01219 .
_:429484 up:source unirule:MF_01219 .
_:429485 up:source unirule:MF_01219 .
?this up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0004845 ,
keyword:328 ,
keyword:804 ,
keyword:808 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Bifunctional protein PyrR' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:429466 .
?namedpart2 up:recommendedName _:429468 .
?gene3 skos:prefLabel 'pyrR' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.' .
?case8 up:classifiedWith GO:0003723 ,
GO:0006353 ,
keyword:694 ,
keyword:805 ,
keyword:806 .
?case9 up:classifiedWith GO:0006355 ,
keyword:805 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'PRPP-binding' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
_:429486 a rdf:Statement ;
up:attribution _:429465 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:429487 a rdf:Statement ;
up:attribution _:429467 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:429488 a rdf:Statement ;
up:attribution _:429469 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:429489 a rdf:Statement ;
up:attribution _:429470 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:429490 a rdf:Statement ;
up:attribution _:429471 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:429491 a rdf:Statement ;
up:attribution _:429472 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:429492 a rdf:Statement ;
up:attribution _:429473 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:429493 a rdf:Statement ;
up:attribution _:429474 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:429494 a rdf:Statement ;
up:attribution _:429475 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:429495 a rdf:Statement ;
up:attribution _:429476 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:429496 a rdf:Statement ;
up:attribution _:429477 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004845 .
_:429497 a rdf:Statement ;
up:attribution _:429478 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:429498 a rdf:Statement ;
up:attribution _:429479 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:806 .
_:429499 a rdf:Statement ;
up:attribution _:429480 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:429500 a rdf:Statement ;
up:attribution _:429481 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:429501 a rdf:Statement ;
up:attribution _:429482 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006353 .
_:429502 a rdf:Statement ;
up:attribution _:429483 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:429503 a rdf:Statement ;
up:attribution _:429484 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006355 .
_:429504 a rdf:Statement ;
up:source unirule:MF_01219 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:429505 a rdf:Statement ;
up:attribution _:429485 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01219
#Rule MF_01219 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01219 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01219a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01219a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01219a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01219a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01219a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01219a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch20 faldo:location ?templateMotifSequenceMatchRegionP3976521 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3976523 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39765MF_0121916 .
?templateMotifSequenceMatchRegionP3976521 faldo:begin ?templateMotifSequenceMatchBeginP3976522 .
?templateMotifSequenceMatchBeginP3976522 faldo:position ?templateMotifSequenceMatchBeginPositionP3976517 ;
faldo:reference isoform:P39765-1 .
?templateMotifSequenceProfileAlignmentOperationP3976523 edam:has_input signature:MF_01219 ;
rdf:type edam:operation_0300 .
?targetMotifMatch24 faldo:location ?targetMotifMatchRegionMatch25 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0121927 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39765MF_0121918 .
?targetMotifMatchRegionMatch25 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0121926 .
?targetMotifMatchRegionMatchBeginMF_0121926 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0121919 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0121927 edam:has_input signature:MF_01219 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39765MF_0121916, 1, (STRLEN(?templateMotifCigarP39765MF_0121916) - STRLEN(REPLACE(?templateMotifCigarP39765MF_0121916, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionP3976517) + 1)), '}'), '')))), '[a-z]', '')) AS ?step128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39765MF_0121918, 1, (STRLEN(?targetMotifMatchCigarP39765MF_0121918) - STRLEN(REPLACE(?targetMotifMatchCigarP39765MF_0121918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39765MF_0121918, 1, (STRLEN(?targetMotifMatchCigarP39765MF_0121918) - STRLEN(REPLACE(?targetMotifMatchCigarP39765MF_0121918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step128), '}'), '')))), '[^-]', ''))) AS ?step229) .
BIND(((?step229 + ?targetMotifMatchRegionMatchBeginPositionMF_0121919) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39765MF_0121916, 1, (STRLEN(?templateMotifCigarP39765MF_0121916) - STRLEN(REPLACE(?templateMotifCigarP39765MF_0121916, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP3976517) + 1)), '}'), '')))), '[a-z]', '')) AS ?step130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39765MF_0121918, 1, (STRLEN(?targetMotifMatchCigarP39765MF_0121918) - STRLEN(REPLACE(?targetMotifMatchCigarP39765MF_0121918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39765MF_0121918, 1, (STRLEN(?targetMotifMatchCigarP39765MF_0121918) - STRLEN(REPLACE(?targetMotifMatchCigarP39765MF_0121918, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step130), '}'), '')))), '[^-]', ''))) AS ?step231) .
BIND(((?step231 + ?targetMotifMatchRegionMatchBeginPositionMF_0121919) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_01219a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1239 .
})) .
BIND(?this AS ?case9) .
}
}
"xsd:string |
