| http://purl.uniprot.org/unirules/MF_01230#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:434385 up:source unirule:MF_01230 .
_:434386 up:source unirule:MF_01230 .
_:434387 up:source unirule:MF_01230 .
_:434388 up:source unirule:MF_01230 .
_:434389 up:source unirule:MF_01230 .
_:434390 up:source unirule:MF_01230 .
_:434391 up:source unirule:MF_01230 .
_:434392 up:source unirule:MF_01230 .
_:434393 up:source unirule:MF_01230 .
_:434394 up:source unirule:MF_01230 .
_:434395 up:source unirule:MF_01230 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0018786 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.8.1.5' ;
up:fullName 'Haloalkane dehalogenase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dhmA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the haloalkane dehalogenase family. Type 1 subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:434396 a rdf:Statement ;
up:attribution _:434385 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:434397 a rdf:Statement ;
up:attribution _:434386 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:434398 a rdf:Statement ;
up:attribution _:434387 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:434399 a rdf:Statement ;
up:attribution _:434388 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:434400 a rdf:Statement ;
up:attribution _:434389 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:434401 a rdf:Statement ;
up:attribution _:434390 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:434402 a rdf:Statement ;
up:attribution _:434391 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:434403 a rdf:Statement ;
up:attribution _:434392 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018786 .
_:434404 a rdf:Statement ;
up:source unirule:MF_01230 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:434405 a rdf:Statement ;
up:attribution _:434393 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:434406 a rdf:Statement ;
up:source unirule:MF_01230 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:434407 a rdf:Statement ;
up:attribution _:434394 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:434408 a rdf:Statement ;
up:source unirule:MF_01230 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:434409 a rdf:Statement ;
up:attribution _:434395 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01230
#Rule MF_01230 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01230 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01230a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01230a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01230a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01230a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01230a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionP2264330 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2264332 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22643MF_0123025 .
?templateMotifSequenceMatchRegionP2264330 faldo:begin ?templateMotifSequenceMatchBeginP2264331 .
?templateMotifSequenceMatchBeginP2264331 faldo:position ?templateMotifSequenceMatchBeginPositionP2264326 ;
faldo:reference isoform:P22643-1 .
?templateMotifSequenceProfileAlignmentOperationP2264332 edam:has_input signature:MF_01230 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123036 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22643MF_0123027 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123035 .
?targetMotifMatchRegionMatchBeginMF_0123035 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123028 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123036 edam:has_input signature:MF_01230 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22643MF_0123025, 1, (STRLEN(?templateMotifCigarP22643MF_0123025) - STRLEN(REPLACE(?templateMotifCigarP22643MF_0123025, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP2264326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22643MF_0123027, 1, (STRLEN(?targetMotifMatchCigarP22643MF_0123027) - STRLEN(REPLACE(?targetMotifMatchCigarP22643MF_0123027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22643MF_0123027, 1, (STRLEN(?targetMotifMatchCigarP22643MF_0123027) - STRLEN(REPLACE(?targetMotifMatchCigarP22643MF_0123027, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0123028) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01230a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionP2264345 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2264347 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22643MF_0123040 .
?templateMotifSequenceMatchRegionP2264345 faldo:begin ?templateMotifSequenceMatchBeginP2264346 .
?templateMotifSequenceMatchBeginP2264346 faldo:position ?templateMotifSequenceMatchBeginPositionP2264341 ;
faldo:reference isoform:P22643-1 .
?templateMotifSequenceProfileAlignmentOperationP2264347 edam:has_input signature:MF_01230 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123051 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22643MF_0123042 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123050 .
?targetMotifMatchRegionMatchBeginMF_0123050 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123043 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123051 edam:has_input signature:MF_01230 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22643MF_0123040, 1, (STRLEN(?templateMotifCigarP22643MF_0123040) - STRLEN(REPLACE(?templateMotifCigarP22643MF_0123040, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionP2264341) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22643MF_0123042, 1, (STRLEN(?targetMotifMatchCigarP22643MF_0123042) - STRLEN(REPLACE(?targetMotifMatchCigarP22643MF_0123042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22643MF_0123042, 1, (STRLEN(?targetMotifMatchCigarP22643MF_0123042) - STRLEN(REPLACE(?targetMotifMatchCigarP22643MF_0123042, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0123043) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01230a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionP2264360 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP2264362 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP22643MF_0123055 .
?templateMotifSequenceMatchRegionP2264360 faldo:begin ?templateMotifSequenceMatchBeginP2264361 .
?templateMotifSequenceMatchBeginP2264361 faldo:position ?templateMotifSequenceMatchBeginPositionP2264356 ;
faldo:reference isoform:P22643-1 .
?templateMotifSequenceProfileAlignmentOperationP2264362 edam:has_input signature:MF_01230 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123066 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP22643MF_0123057 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123065 .
?targetMotifMatchRegionMatchBeginMF_0123065 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123058 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123066 edam:has_input signature:MF_01230 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP22643MF_0123055, 1, (STRLEN(?templateMotifCigarP22643MF_0123055) - STRLEN(REPLACE(?templateMotifCigarP22643MF_0123055, CONCAT('^(?:-*[^-]){', STR(((289 - ?templateMotifSequenceMatchBeginPositionP2264356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP22643MF_0123057, 1, (STRLEN(?targetMotifMatchCigarP22643MF_0123057) - STRLEN(REPLACE(?targetMotifMatchCigarP22643MF_0123057, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP22643MF_0123057, 1, (STRLEN(?targetMotifMatchCigarP22643MF_0123057) - STRLEN(REPLACE(?targetMotifMatchCigarP22643MF_0123057, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0123058) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01230a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
