| http://purl.uniprot.org/unirules/MF_01231#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:434607 up:source unirule:MF_01231 .
_:434608 up:source unirule:MF_01231 .
_:434609 up:source unirule:MF_01231 .
_:434610 up:source unirule:MF_01231 .
_:434611 up:source unirule:MF_01231 .
_:434612 up:source unirule:MF_01231 .
_:434613 up:source unirule:MF_01231 .
_:434614 up:source unirule:MF_01231 .
_:434615 up:source unirule:MF_01231 .
_:434616 up:source unirule:MF_01231 .
_:434617 up:source unirule:MF_01231 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0018786 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.8.1.5' ;
up:fullName 'Haloalkane dehalogenase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dhaA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the haloalkane dehalogenase family. Type 2 subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:434618 a rdf:Statement ;
up:attribution _:434607 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:434619 a rdf:Statement ;
up:attribution _:434608 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:434620 a rdf:Statement ;
up:attribution _:434609 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:434621 a rdf:Statement ;
up:attribution _:434610 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:434622 a rdf:Statement ;
up:attribution _:434611 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:434623 a rdf:Statement ;
up:attribution _:434612 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:434624 a rdf:Statement ;
up:attribution _:434613 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:434625 a rdf:Statement ;
up:attribution _:434614 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018786 .
_:434626 a rdf:Statement ;
up:source unirule:MF_01231 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:434627 a rdf:Statement ;
up:attribution _:434615 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:434628 a rdf:Statement ;
up:source unirule:MF_01231 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:434629 a rdf:Statement ;
up:attribution _:434616 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:434630 a rdf:Statement ;
up:source unirule:MF_01231 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:434631 a rdf:Statement ;
up:attribution _:434617 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01231
#Rule MF_01231 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2023-01-17
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01231 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01231a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01231a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01231a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01231a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01231a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionD4Z2G130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4Z2G132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4Z2G1MF_0123125 .
?templateMotifSequenceMatchRegionD4Z2G130 faldo:begin ?templateMotifSequenceMatchBeginD4Z2G131 .
?templateMotifSequenceMatchBeginD4Z2G131 faldo:position ?templateMotifSequenceMatchBeginPositionD4Z2G126 ;
faldo:reference isoform:D4Z2G1-1 .
?templateMotifSequenceProfileAlignmentOperationD4Z2G132 edam:has_input signature:MF_01231 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4Z2G1MF_0123127 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123135 .
?targetMotifMatchRegionMatchBeginMF_0123135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123136 edam:has_input signature:MF_01231 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4Z2G1MF_0123125, 1, (STRLEN(?templateMotifCigarD4Z2G1MF_0123125) - STRLEN(REPLACE(?templateMotifCigarD4Z2G1MF_0123125, CONCAT('^(?:-*[^-]){', STR(((108 - ?templateMotifSequenceMatchBeginPositionD4Z2G126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4Z2G1MF_0123127, 1, (STRLEN(?targetMotifMatchCigarD4Z2G1MF_0123127) - STRLEN(REPLACE(?targetMotifMatchCigarD4Z2G1MF_0123127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4Z2G1MF_0123127, 1, (STRLEN(?targetMotifMatchCigarD4Z2G1MF_0123127) - STRLEN(REPLACE(?targetMotifMatchCigarD4Z2G1MF_0123127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0123128) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01231a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionD4Z2G145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4Z2G147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4Z2G1MF_0123140 .
?templateMotifSequenceMatchRegionD4Z2G145 faldo:begin ?templateMotifSequenceMatchBeginD4Z2G146 .
?templateMotifSequenceMatchBeginD4Z2G146 faldo:position ?templateMotifSequenceMatchBeginPositionD4Z2G141 ;
faldo:reference isoform:D4Z2G1-1 .
?templateMotifSequenceProfileAlignmentOperationD4Z2G147 edam:has_input signature:MF_01231 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4Z2G1MF_0123142 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123150 .
?targetMotifMatchRegionMatchBeginMF_0123150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123151 edam:has_input signature:MF_01231 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4Z2G1MF_0123140, 1, (STRLEN(?templateMotifCigarD4Z2G1MF_0123140) - STRLEN(REPLACE(?templateMotifCigarD4Z2G1MF_0123140, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionD4Z2G141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4Z2G1MF_0123142, 1, (STRLEN(?targetMotifMatchCigarD4Z2G1MF_0123142) - STRLEN(REPLACE(?targetMotifMatchCigarD4Z2G1MF_0123142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4Z2G1MF_0123142, 1, (STRLEN(?targetMotifMatchCigarD4Z2G1MF_0123142) - STRLEN(REPLACE(?targetMotifMatchCigarD4Z2G1MF_0123142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0123143) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01231a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionD4Z2G160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD4Z2G162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD4Z2G1MF_0123155 .
?templateMotifSequenceMatchRegionD4Z2G160 faldo:begin ?templateMotifSequenceMatchBeginD4Z2G161 .
?templateMotifSequenceMatchBeginD4Z2G161 faldo:position ?templateMotifSequenceMatchBeginPositionD4Z2G156 ;
faldo:reference isoform:D4Z2G1-1 .
?templateMotifSequenceProfileAlignmentOperationD4Z2G162 edam:has_input signature:MF_01231 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0123166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD4Z2G1MF_0123157 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0123165 .
?targetMotifMatchRegionMatchBeginMF_0123165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0123158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0123166 edam:has_input signature:MF_01231 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD4Z2G1MF_0123155, 1, (STRLEN(?templateMotifCigarD4Z2G1MF_0123155) - STRLEN(REPLACE(?templateMotifCigarD4Z2G1MF_0123155, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionD4Z2G156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD4Z2G1MF_0123157, 1, (STRLEN(?targetMotifMatchCigarD4Z2G1MF_0123157) - STRLEN(REPLACE(?targetMotifMatchCigarD4Z2G1MF_0123157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD4Z2G1MF_0123157, 1, (STRLEN(?targetMotifMatchCigarD4Z2G1MF_0123157) - STRLEN(REPLACE(?targetMotifMatchCigarD4Z2G1MF_0123157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0123158) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01231a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
