| http://purl.uniprot.org/unirules/MF_01242#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:437596 up:source unirule:MF_01242 .
_:437597 up:source unirule:MF_01242 .
_:437598 up:source unirule:MF_01242 .
_:437599 up:source unirule:MF_01242 .
_:437600 up:source unirule:MF_01242 .
_:437601 up:source unirule:MF_01242 .
_:437602 up:source unirule:MF_01242 .
_:437603 up:source unirule:MF_01242 .
_:437604 up:source unirule:MF_01242 .
_:437605 up:source unirule:MF_01242 .
_:437606 up:source unirule:MF_01242 .
_:437607 up:source unirule:MF_01242 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0004040 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.4' ;
up:fullName 'Aliphatic amidase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Acylamide amidohydrolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'amiE' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia.' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
_:437608 a rdf:Statement ;
up:attribution _:437596 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:437609 a rdf:Statement ;
up:attribution _:437597 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:437610 a rdf:Statement ;
up:attribution _:437598 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:437611 a rdf:Statement ;
up:attribution _:437599 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:437612 a rdf:Statement ;
up:attribution _:437600 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:437613 a rdf:Statement ;
up:attribution _:437601 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:437614 a rdf:Statement ;
up:attribution _:437602 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:437615 a rdf:Statement ;
up:attribution _:437603 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:437616 a rdf:Statement ;
up:attribution _:437604 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004040 .
_:437617 a rdf:Statement ;
up:source unirule:MF_01242 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:437618 a rdf:Statement ;
up:attribution _:437605 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:437619 a rdf:Statement ;
up:source unirule:MF_01242 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:437620 a rdf:Statement ;
up:attribution _:437606 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:437621 a rdf:Statement ;
up:source unirule:MF_01242 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:437622 a rdf:Statement ;
up:attribution _:437607 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01242
#Rule MF_01242 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01242 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01242a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP1143631 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1143633 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11436MF_0124226 .
?templateMotifSequenceMatchRegionP1143631 faldo:begin ?templateMotifSequenceMatchBeginP1143632 .
?templateMotifSequenceMatchBeginP1143632 faldo:position ?templateMotifSequenceMatchBeginPositionP1143627 ;
faldo:reference isoform:P11436-1 .
?templateMotifSequenceProfileAlignmentOperationP1143633 edam:has_input signature:MF_01242 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124237 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11436MF_0124228 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124236 .
?targetMotifMatchRegionMatchBeginMF_0124236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124229 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124237 edam:has_input signature:MF_01242 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11436MF_0124226, 1, (STRLEN(?templateMotifCigarP11436MF_0124226) - STRLEN(REPLACE(?templateMotifCigarP11436MF_0124226, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP1143627) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11436MF_0124228, 1, (STRLEN(?targetMotifMatchCigarP11436MF_0124228) - STRLEN(REPLACE(?targetMotifMatchCigarP11436MF_0124228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11436MF_0124228, 1, (STRLEN(?targetMotifMatchCigarP11436MF_0124228) - STRLEN(REPLACE(?targetMotifMatchCigarP11436MF_0124228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0124229) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP1143646 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1143648 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11436MF_0124241 .
?templateMotifSequenceMatchRegionP1143646 faldo:begin ?templateMotifSequenceMatchBeginP1143647 .
?templateMotifSequenceMatchBeginP1143647 faldo:position ?templateMotifSequenceMatchBeginPositionP1143642 ;
faldo:reference isoform:P11436-1 .
?templateMotifSequenceProfileAlignmentOperationP1143648 edam:has_input signature:MF_01242 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11436MF_0124243 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124251 .
?targetMotifMatchRegionMatchBeginMF_0124251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124252 edam:has_input signature:MF_01242 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11436MF_0124241, 1, (STRLEN(?templateMotifCigarP11436MF_0124241) - STRLEN(REPLACE(?templateMotifCigarP11436MF_0124241, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionP1143642) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11436MF_0124243, 1, (STRLEN(?targetMotifMatchCigarP11436MF_0124243) - STRLEN(REPLACE(?targetMotifMatchCigarP11436MF_0124243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11436MF_0124243, 1, (STRLEN(?targetMotifMatchCigarP11436MF_0124243) - STRLEN(REPLACE(?targetMotifMatchCigarP11436MF_0124243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0124244) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP1143661 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1143663 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11436MF_0124256 .
?templateMotifSequenceMatchRegionP1143661 faldo:begin ?templateMotifSequenceMatchBeginP1143662 .
?templateMotifSequenceMatchBeginP1143662 faldo:position ?templateMotifSequenceMatchBeginPositionP1143657 ;
faldo:reference isoform:P11436-1 .
?templateMotifSequenceProfileAlignmentOperationP1143663 edam:has_input signature:MF_01242 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11436MF_0124258 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124266 .
?targetMotifMatchRegionMatchBeginMF_0124266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124267 edam:has_input signature:MF_01242 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11436MF_0124256, 1, (STRLEN(?templateMotifCigarP11436MF_0124256) - STRLEN(REPLACE(?templateMotifCigarP11436MF_0124256, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP1143657) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11436MF_0124258, 1, (STRLEN(?targetMotifMatchCigarP11436MF_0124258) - STRLEN(REPLACE(?targetMotifMatchCigarP11436MF_0124258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11436MF_0124258, 1, (STRLEN(?targetMotifMatchCigarP11436MF_0124258) - STRLEN(REPLACE(?targetMotifMatchCigarP11436MF_0124258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0124259) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01242a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
}
"xsd:string |
