| http://purl.uniprot.org/unirules/MF_01243#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:437821 up:source unirule:MF_01243 .
_:437822 up:source unirule:MF_01243 .
_:437823 up:source unirule:MF_01243 .
_:437824 up:source unirule:MF_01243 .
_:437825 up:source unirule:MF_01243 .
_:437826 up:source unirule:MF_01243 .
_:437827 up:source unirule:MF_01243 .
_:437828 up:source unirule:MF_01243 .
_:437829 up:source unirule:MF_01243 .
_:437830 up:source unirule:MF_01243 .
_:437831 up:source unirule:MF_01243 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0004328 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.49' ;
up:fullName 'Formamidase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Formamide amidohydrolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'amiF' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Is an aliphatic amidase with a restricted substrate specificity, as it only hydrolyzes formamide.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
_:437832 a rdf:Statement ;
up:attribution _:437821 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:437833 a rdf:Statement ;
up:attribution _:437822 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:437834 a rdf:Statement ;
up:attribution _:437823 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:437835 a rdf:Statement ;
up:attribution _:437824 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:437836 a rdf:Statement ;
up:attribution _:437825 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:437837 a rdf:Statement ;
up:attribution _:437826 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:437838 a rdf:Statement ;
up:attribution _:437827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:437839 a rdf:Statement ;
up:attribution _:437828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004328 .
_:437840 a rdf:Statement ;
up:source unirule:MF_01243 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:437841 a rdf:Statement ;
up:attribution _:437829 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:437842 a rdf:Statement ;
up:source unirule:MF_01243 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:437843 a rdf:Statement ;
up:attribution _:437830 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:437844 a rdf:Statement ;
up:source unirule:MF_01243 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:437845 a rdf:Statement ;
up:attribution _:437831 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01243
#Rule MF_01243 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2019-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01243 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01243a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01243a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01243a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01243a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01243a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch29 faldo:location ?templateMotifSequenceMatchRegionO2583630 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2583632 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO25836MF_0124325 .
?templateMotifSequenceMatchRegionO2583630 faldo:begin ?templateMotifSequenceMatchBeginO2583631 .
?templateMotifSequenceMatchBeginO2583631 faldo:position ?templateMotifSequenceMatchBeginPositionO2583626 ;
faldo:reference isoform:O25836-1 .
?templateMotifSequenceProfileAlignmentOperationO2583632 edam:has_input signature:MF_01243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch33 faldo:location ?targetMotifMatchRegionMatch34 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO25836MF_0124327 .
?targetMotifMatchRegionMatch34 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124335 .
?targetMotifMatchRegionMatchBeginMF_0124335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124336 edam:has_input signature:MF_01243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO25836MF_0124325, 1, (STRLEN(?templateMotifCigarO25836MF_0124325) - STRLEN(REPLACE(?templateMotifCigarO25836MF_0124325, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionO2583626) + 1)), '}'), '')))), '[a-z]', '')) AS ?step137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO25836MF_0124327, 1, (STRLEN(?targetMotifMatchCigarO25836MF_0124327) - STRLEN(REPLACE(?targetMotifMatchCigarO25836MF_0124327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO25836MF_0124327, 1, (STRLEN(?targetMotifMatchCigarO25836MF_0124327) - STRLEN(REPLACE(?targetMotifMatchCigarO25836MF_0124327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step137), '}'), '')))), '[^-]', ''))) AS ?step238) .
BIND(((?step238 + ?targetMotifMatchRegionMatchBeginPositionMF_0124328) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01243a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionO2583645 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2583647 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO25836MF_0124340 .
?templateMotifSequenceMatchRegionO2583645 faldo:begin ?templateMotifSequenceMatchBeginO2583646 .
?templateMotifSequenceMatchBeginO2583646 faldo:position ?templateMotifSequenceMatchBeginPositionO2583641 ;
faldo:reference isoform:O25836-1 .
?templateMotifSequenceProfileAlignmentOperationO2583647 edam:has_input signature:MF_01243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO25836MF_0124342 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124350 .
?targetMotifMatchRegionMatchBeginMF_0124350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124351 edam:has_input signature:MF_01243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO25836MF_0124340, 1, (STRLEN(?templateMotifCigarO25836MF_0124340) - STRLEN(REPLACE(?templateMotifCigarO25836MF_0124340, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO2583641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO25836MF_0124342, 1, (STRLEN(?targetMotifMatchCigarO25836MF_0124342) - STRLEN(REPLACE(?targetMotifMatchCigarO25836MF_0124342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO25836MF_0124342, 1, (STRLEN(?targetMotifMatchCigarO25836MF_0124342) - STRLEN(REPLACE(?targetMotifMatchCigarO25836MF_0124342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0124343) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01243a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch59 faldo:location ?templateMotifSequenceMatchRegionO2583660 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO2583662 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO25836MF_0124355 .
?templateMotifSequenceMatchRegionO2583660 faldo:begin ?templateMotifSequenceMatchBeginO2583661 .
?templateMotifSequenceMatchBeginO2583661 faldo:position ?templateMotifSequenceMatchBeginPositionO2583656 ;
faldo:reference isoform:O25836-1 .
?templateMotifSequenceProfileAlignmentOperationO2583662 edam:has_input signature:MF_01243 ;
rdf:type edam:operation_0300 .
?targetMotifMatch63 faldo:location ?targetMotifMatchRegionMatch64 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124366 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO25836MF_0124357 .
?targetMotifMatchRegionMatch64 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124365 .
?targetMotifMatchRegionMatchBeginMF_0124365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124358 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124366 edam:has_input signature:MF_01243 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO25836MF_0124355, 1, (STRLEN(?templateMotifCigarO25836MF_0124355) - STRLEN(REPLACE(?templateMotifCigarO25836MF_0124355, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionO2583656) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO25836MF_0124357, 1, (STRLEN(?targetMotifMatchCigarO25836MF_0124357) - STRLEN(REPLACE(?targetMotifMatchCigarO25836MF_0124357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO25836MF_0124357, 1, (STRLEN(?targetMotifMatchCigarO25836MF_0124357) - STRLEN(REPLACE(?targetMotifMatchCigarO25836MF_0124357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0124358) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01243a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
}
"xsd:string |
