| http://purl.uniprot.org/unirules/MF_01248#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:439192 up:source unirule:MF_01248 .
_:439193 up:source unirule:MF_01248 .
_:439194 up:source unirule:MF_01248 .
_:439195 up:source unirule:MF_01248 .
_:439196 up:source unirule:MF_01248 .
_:439197 up:source unirule:MF_01248 .
_:439198 up:source unirule:MF_01248 .
_:439199 up:source unirule:MF_01248 .
_:439200 up:source unirule:MF_01248 .
_:439201 up:source unirule:MF_01248 .
_:439202 up:source unirule:MF_01248 .
_:439203 up:source unirule:MF_01248 .
_:439204 up:source unirule:MF_01248 .
_:439205 up:source unirule:MF_01248 .
_:439206 up:source unirule:MF_01248 .
_:439207 up:source unirule:MF_01248 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0005980 ,
GO:0120549 ,
keyword:119 ,
keyword:321 ,
keyword:326 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.1.196' ;
up:fullName 'Glycogen debranching enzyme' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Limit dextrin alpha-1,6-maltotetraose-hydrolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'glgX' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Removes maltotriose and maltotetraose chains that are attached by 1,6-alpha-linkage to the limit dextrin main chain, generating a debranched limit dextrin.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Glycan degradation; glycogen degradation.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyl hydrolase 13 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
_:439208 a rdf:Statement ;
up:attribution _:439192 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:439209 a rdf:Statement ;
up:attribution _:439193 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:439210 a rdf:Statement ;
up:attribution _:439194 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:439211 a rdf:Statement ;
up:attribution _:439195 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:439212 a rdf:Statement ;
up:attribution _:439196 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:439213 a rdf:Statement ;
up:attribution _:439197 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:439214 a rdf:Statement ;
up:attribution _:439198 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:439215 a rdf:Statement ;
up:attribution _:439199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:439216 a rdf:Statement ;
up:attribution _:439200 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:321 .
_:439217 a rdf:Statement ;
up:attribution _:439201 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:439218 a rdf:Statement ;
up:attribution _:439202 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:439219 a rdf:Statement ;
up:attribution _:439203 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0120549 .
_:439220 a rdf:Statement ;
up:attribution _:439204 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005980 .
_:439221 a rdf:Statement ;
up:source unirule:MF_01248 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:439222 a rdf:Statement ;
up:attribution _:439205 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:439223 a rdf:Statement ;
up:source unirule:MF_01248 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:439224 a rdf:Statement ;
up:attribution _:439206 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:439225 a rdf:Statement ;
up:source unirule:MF_01248 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:439226 a rdf:Statement ;
up:attribution _:439207 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01248
#Rule MF_01248 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01248 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_01248a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch30 faldo:location ?templateMotifSequenceMatchRegionP1506731 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1506733 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15067MF_0124826 .
?templateMotifSequenceMatchRegionP1506731 faldo:begin ?templateMotifSequenceMatchBeginP1506732 .
?templateMotifSequenceMatchBeginP1506732 faldo:position ?templateMotifSequenceMatchBeginPositionP1506727 ;
faldo:reference isoform:P15067-1 .
?templateMotifSequenceProfileAlignmentOperationP1506733 edam:has_input signature:MF_01248 ;
rdf:type edam:operation_0300 .
?targetMotifMatch34 faldo:location ?targetMotifMatchRegionMatch35 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124837 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15067MF_0124828 .
?targetMotifMatchRegionMatch35 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124836 .
?targetMotifMatchRegionMatchBeginMF_0124836 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124829 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124837 edam:has_input signature:MF_01248 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15067MF_0124826, 1, (STRLEN(?templateMotifCigarP15067MF_0124826) - STRLEN(REPLACE(?templateMotifCigarP15067MF_0124826, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP1506727) + 1)), '}'), '')))), '[a-z]', '')) AS ?step138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15067MF_0124828, 1, (STRLEN(?targetMotifMatchCigarP15067MF_0124828) - STRLEN(REPLACE(?targetMotifMatchCigarP15067MF_0124828, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15067MF_0124828, 1, (STRLEN(?targetMotifMatchCigarP15067MF_0124828) - STRLEN(REPLACE(?targetMotifMatchCigarP15067MF_0124828, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step138), '}'), '')))), '[^-]', ''))) AS ?step239) .
BIND(((?step239 + ?targetMotifMatchRegionMatchBeginPositionMF_0124829) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch45 faldo:location ?templateMotifSequenceMatchRegionP1506746 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1506748 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15067MF_0124841 .
?templateMotifSequenceMatchRegionP1506746 faldo:begin ?templateMotifSequenceMatchBeginP1506747 .
?templateMotifSequenceMatchBeginP1506747 faldo:position ?templateMotifSequenceMatchBeginPositionP1506742 ;
faldo:reference isoform:P15067-1 .
?templateMotifSequenceProfileAlignmentOperationP1506748 edam:has_input signature:MF_01248 ;
rdf:type edam:operation_0300 .
?targetMotifMatch49 faldo:location ?targetMotifMatchRegionMatch50 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124852 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15067MF_0124843 .
?targetMotifMatchRegionMatch50 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124851 .
?targetMotifMatchRegionMatchBeginMF_0124851 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124844 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124852 edam:has_input signature:MF_01248 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15067MF_0124841, 1, (STRLEN(?templateMotifCigarP15067MF_0124841) - STRLEN(REPLACE(?templateMotifCigarP15067MF_0124841, CONCAT('^(?:-*[^-]){', STR(((371 - ?templateMotifSequenceMatchBeginPositionP1506742) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15067MF_0124843, 1, (STRLEN(?targetMotifMatchCigarP15067MF_0124843) - STRLEN(REPLACE(?targetMotifMatchCigarP15067MF_0124843, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15067MF_0124843, 1, (STRLEN(?targetMotifMatchCigarP15067MF_0124843) - STRLEN(REPLACE(?targetMotifMatchCigarP15067MF_0124843, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0124844) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP1506761 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1506763 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15067MF_0124856 .
?templateMotifSequenceMatchRegionP1506761 faldo:begin ?templateMotifSequenceMatchBeginP1506762 .
?templateMotifSequenceMatchBeginP1506762 faldo:position ?templateMotifSequenceMatchBeginPositionP1506757 ;
faldo:reference isoform:P15067-1 .
?templateMotifSequenceProfileAlignmentOperationP1506763 edam:has_input signature:MF_01248 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0124867 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15067MF_0124858 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0124866 .
?targetMotifMatchRegionMatchBeginMF_0124866 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0124859 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0124867 edam:has_input signature:MF_01248 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15067MF_0124856, 1, (STRLEN(?templateMotifCigarP15067MF_0124856) - STRLEN(REPLACE(?templateMotifCigarP15067MF_0124856, CONCAT('^(?:-*[^-]){', STR(((443 - ?templateMotifSequenceMatchBeginPositionP1506757) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15067MF_0124858, 1, (STRLEN(?targetMotifMatchCigarP15067MF_0124858) - STRLEN(REPLACE(?targetMotifMatchCigarP15067MF_0124858, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15067MF_0124858, 1, (STRLEN(?targetMotifMatchCigarP15067MF_0124858) - STRLEN(REPLACE(?targetMotifMatchCigarP15067MF_0124858, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0124859) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01248a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
}
"xsd:string |
