| http://purl.uniprot.org/unirules/MF_01319#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:473109 up:source unirule:MF_01319 .
_:473110 up:source unirule:MF_01319 .
_:473111 up:source unirule:MF_01319 .
_:473112 up:source unirule:MF_01319 .
_:473113 up:source unirule:MF_01319 .
_:473114 up:source unirule:MF_01319 .
_:473115 up:source unirule:MF_01319 .
_:473116 up:source unirule:MF_01319 .
_:473117 up:source unirule:MF_01319 .
_:473118 up:source unirule:MF_01319 .
_:473119 up:source unirule:MF_01319 .
_:473120 up:source unirule:MF_01319 .
_:473121 up:source unirule:MF_01319 .
_:473122 up:source unirule:MF_01319 .
_:473123 up:source unirule:MF_01319 .
_:473124 up:source unirule:MF_01319 .
_:473125 up:source unirule:MF_01319 .
_:473126 up:source unirule:MF_01319 .
_:473127 up:source unirule:MF_01319 .
_:473128 up:source unirule:MF_01319 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005886 ,
GO:0015036 ,
GO:0017004 ,
keyword:1003 ,
keyword:1133 ,
keyword:201 ,
keyword:472 ,
keyword:560 ,
keyword:676 ,
keyword:735 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Thiol-disulfide oxidoreductase ResA' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'resA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Thiol-disulfide oxidoreductase which is required in disulfide reduction during c-type cytochrome synthesis. May accept reducing equivalents from CcdA, leading to breakage of disulfide bonds in apocytochrome c; following this reduction heme can be covalently attached.' .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Protein modification; cytochrome c assembly.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The thioredoxin-like motif is exposed on the outside of the membrane' .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thioredoxin family. ResA subfamily.' .
?case7 up:classifiedWith keyword:1015 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical; Signal-anchor for type II membrane protein' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
_:473129 a rdf:Statement ;
up:attribution _:473109 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:473130 a rdf:Statement ;
up:attribution _:473110 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:473131 a rdf:Statement ;
up:attribution _:473111 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:473132 a rdf:Statement ;
up:attribution _:473112 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:473133 a rdf:Statement ;
up:attribution _:473113 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:473134 a rdf:Statement ;
up:attribution _:473114 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:473135 a rdf:Statement ;
up:attribution _:473115 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:473136 a rdf:Statement ;
up:attribution _:473116 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:201 .
_:473137 a rdf:Statement ;
up:attribution _:473117 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:473138 a rdf:Statement ;
up:attribution _:473118 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:473139 a rdf:Statement ;
up:attribution _:473119 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:676 .
_:473140 a rdf:Statement ;
up:attribution _:473120 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:735 .
_:473141 a rdf:Statement ;
up:attribution _:473121 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:473142 a rdf:Statement ;
up:attribution _:473122 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:473143 a rdf:Statement ;
up:attribution _:473123 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015036 .
_:473144 a rdf:Statement ;
up:attribution _:473124 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017004 .
_:473145 a rdf:Statement ;
up:attribution _:473125 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:473146 a rdf:Statement ;
up:attribution _:473126 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:473147 a rdf:Statement ;
up:source unirule:MF_01319 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:473148 a rdf:Statement ;
up:attribution _:473127 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:473149 a rdf:Statement ;
up:source unirule:MF_01319 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:473150 a rdf:Statement ;
up:attribution _:473128 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01319
#Rule MF_01319 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2022-02-15
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01319 .
?thisOrganism rdfs:subClassOf+ taxon:186817 .
BIND(URI(CONCAT(STR(?this), '#MF_01319a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01319a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01319a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01319a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01319a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch24 faldo:location ?templateMotifSequenceMatchRegionP3516025 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3516027 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP35160MF_0131920 .
?templateMotifSequenceMatchRegionP3516025 faldo:begin ?templateMotifSequenceMatchBeginP3516026 .
?templateMotifSequenceMatchBeginP3516026 faldo:position ?templateMotifSequenceMatchBeginPositionP3516021 ;
faldo:reference isoform:P35160-1 .
?templateMotifSequenceProfileAlignmentOperationP3516027 edam:has_input signature:MF_01319 ;
rdf:type edam:operation_0300 .
?targetMotifMatch28 faldo:location ?targetMotifMatchRegionMatch29 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0131931 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP35160MF_0131922 .
?targetMotifMatchRegionMatch29 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0131930 .
?targetMotifMatchRegionMatchBeginMF_0131930 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0131923 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0131931 edam:has_input signature:MF_01319 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP35160MF_0131920, 1, (STRLEN(?templateMotifCigarP35160MF_0131920) - STRLEN(REPLACE(?templateMotifCigarP35160MF_0131920, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP3516021) + 1)), '}'), '')))), '[a-z]', '')) AS ?step132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP35160MF_0131922, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131922) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131922, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP35160MF_0131922, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131922) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131922, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step132), '}'), '')))), '[^-]', ''))) AS ?step233) .
BIND(((?step233 + ?targetMotifMatchRegionMatchBeginPositionMF_0131923) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP35160MF_0131920, 1, (STRLEN(?templateMotifCigarP35160MF_0131920) - STRLEN(REPLACE(?templateMotifCigarP35160MF_0131920, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionP3516021) + 1)), '}'), '')))), '[a-z]', '')) AS ?step134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP35160MF_0131922, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131922) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131922, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP35160MF_0131922, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131922) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131922, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step134), '}'), '')))), '[^-]', ''))) AS ?step235) .
BIND(((?step235 + ?targetMotifMatchRegionMatchBeginPositionMF_0131923) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]PC', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01319a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionP3516042 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3516044 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP35160MF_0131937 .
?templateMotifSequenceMatchRegionP3516042 faldo:begin ?templateMotifSequenceMatchBeginP3516043 .
?templateMotifSequenceMatchBeginP3516043 faldo:position ?templateMotifSequenceMatchBeginPositionP3516038 ;
faldo:reference isoform:P35160-1 .
?templateMotifSequenceProfileAlignmentOperationP3516044 edam:has_input signature:MF_01319 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0131948 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP35160MF_0131939 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0131947 .
?targetMotifMatchRegionMatchBeginMF_0131947 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0131940 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0131948 edam:has_input signature:MF_01319 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP35160MF_0131937, 1, (STRLEN(?templateMotifCigarP35160MF_0131937) - STRLEN(REPLACE(?templateMotifCigarP35160MF_0131937, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP3516038) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP35160MF_0131939, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131939) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131939, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP35160MF_0131939, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131939) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131939, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0131940) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP35160MF_0131937, 1, (STRLEN(?templateMotifCigarP35160MF_0131937) - STRLEN(REPLACE(?templateMotifCigarP35160MF_0131937, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP3516038) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP35160MF_0131939, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131939) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131939, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP35160MF_0131939, 1, (STRLEN(?targetMotifMatchCigarP35160MF_0131939) - STRLEN(REPLACE(?targetMotifMatchCigarP35160MF_0131939, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0131940) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs2t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_01319a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag54) .
}
BIND(IF(BOUND(?tagFT_2), ?caseWithTag54, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
