| http://purl.uniprot.org/unirules/MF_01533#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:555950 up:source unirule:MF_01533 .
_:555951 up:source unirule:MF_01533 .
_:555952 up:source unirule:MF_01533 .
_:555953 up:source unirule:MF_01533 .
_:555954 up:source unirule:MF_01533 .
_:555955 up:source unirule:MF_01533 .
_:555956 up:source unirule:MF_01533 .
_:555957 up:source unirule:MF_01533 .
_:555958 up:source unirule:MF_01533 .
_:555959 up:source unirule:MF_01533 .
_:555960 up:source unirule:MF_01533 .
_:555961 up:source unirule:MF_01533 .
_:555962 up:source unirule:MF_01533 .
_:555963 up:source unirule:MF_01533 .
_:555964 up:source unirule:MF_01533 .
_:555965 up:source unirule:MF_01533 .
_:555966 up:source unirule:MF_01533 .
_:555967 up:source unirule:MF_01533 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0003700 ,
GO:0005737 ,
GO:0019318 ,
GO:0045893 ,
keyword:10 ,
keyword:238 ,
keyword:677 ,
keyword:684 ,
keyword:804 ,
keyword:805 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'HTH-type transcriptional activator RhaR' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'L-rhamnose operon transcriptional activator RhaR' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rhaR' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Activates expression of the rhaSR operon in response to L-rhamnose.' .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Binds DNA as a dimer.' .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with sigma-70' .
?pfsb9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
_:555968 a rdf:Statement ;
up:attribution _:555950 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:555969 a rdf:Statement ;
up:attribution _:555951 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:555970 a rdf:Statement ;
up:attribution _:555952 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:555971 a rdf:Statement ;
up:attribution _:555953 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:555972 a rdf:Statement ;
up:attribution _:555954 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:555973 a rdf:Statement ;
up:attribution _:555955 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:555974 a rdf:Statement ;
up:attribution _:555956 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:555975 a rdf:Statement ;
up:attribution _:555957 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:10 .
_:555976 a rdf:Statement ;
up:attribution _:555958 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:555977 a rdf:Statement ;
up:attribution _:555959 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:555978 a rdf:Statement ;
up:attribution _:555960 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:684 .
_:555979 a rdf:Statement ;
up:attribution _:555961 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:555980 a rdf:Statement ;
up:attribution _:555962 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:555981 a rdf:Statement ;
up:attribution _:555963 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003700 .
_:555982 a rdf:Statement ;
up:attribution _:555964 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019318 .
_:555983 a rdf:Statement ;
up:attribution _:555965 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0045893 .
_:555984 a rdf:Statement ;
up:attribution _:555966 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:555985 a rdf:Statement ;
up:source unirule:MF_01533 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:555986 a rdf:Statement ;
up:attribution _:555967 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01533
#Rule MF_01533 Created by:? on:2005-03-23 Modified by:Catherine Rivoire on:2025-09-18
VALUES ?supertaxon13 {taxon:91347 taxon:712}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01533 .
?thisOrganism rdfs:subClassOf+ ?supertaxon13 .
BIND(URI(CONCAT(STR(?this), '#MF_01533a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01533a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01533a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01533a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01533a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch18 faldo:location ?templateMotifSequenceMatchRegionP0937819 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0937821 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP09378MF_0153314 .
?templateMotifSequenceMatchRegionP0937819 faldo:begin ?templateMotifSequenceMatchBeginP0937820 .
?templateMotifSequenceMatchBeginP0937820 faldo:position ?templateMotifSequenceMatchBeginPositionP0937815 ;
faldo:reference isoform:P09378-1 .
?templateMotifSequenceProfileAlignmentOperationP0937821 edam:has_input signature:MF_01533 ;
rdf:type edam:operation_0300 .
?targetMotifMatch22 faldo:location ?targetMotifMatchRegionMatch23 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0153325 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP09378MF_0153316 .
?targetMotifMatchRegionMatch23 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0153324 .
?targetMotifMatchRegionMatchBeginMF_0153324 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0153317 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0153325 edam:has_input signature:MF_01533 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP09378MF_0153314, 1, (STRLEN(?templateMotifCigarP09378MF_0153314) - STRLEN(REPLACE(?templateMotifCigarP09378MF_0153314, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP0937815) + 1)), '}'), '')))), '[a-z]', '')) AS ?step126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP09378MF_0153316, 1, (STRLEN(?targetMotifMatchCigarP09378MF_0153316) - STRLEN(REPLACE(?targetMotifMatchCigarP09378MF_0153316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP09378MF_0153316, 1, (STRLEN(?targetMotifMatchCigarP09378MF_0153316) - STRLEN(REPLACE(?targetMotifMatchCigarP09378MF_0153316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step126), '}'), '')))), '[^-]', ''))) AS ?step227) .
BIND(((?step227 + ?targetMotifMatchRegionMatchBeginPositionMF_0153317) - 1) AS ?thisPositionOn11) .
BIND(?thisPositionOn11 AS ?thisPositionOn12) .
BIND(?this AS ?pfs1t28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfse10) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn11, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01533a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
}
"xsd:string |
